Search Results - "Remy, Elisabeth"

From multivalued to Boolean functions: Preservation of soft nested canalization by Remy, Élisabeth, Ruet, Paul

“…Nested canalization (NC) is a property of Boolean functions which has been recently extended to multivalued functions. We study the effect of the Van Ham…”
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Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer by Cantini, Laura, Zakeri, Pooya, Hernandez, Celine, Naldi, Aurelien, Thieffry, Denis, Remy, Elisabeth, Baudot, Anaïs

“…High-dimensional multi-omics data are now standard in biology. They can greatly enhance our understanding of biological systems when effectively integrated. To…”
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A Modeling Approach to Explain Mutually Exclusive and Co-Occurring Genetic Alterations in Bladder Tumorigenesis by Remy, Elisabeth, Rebouissou, Sandra, Chaouiya, Claudine, Zinovyev, Andrei, Radvanyi, François, Calzone, Laurence

“…Relationships between genetic alterations, such as co-occurrence or mutual exclusivity, are often observed in cancer, where their understanding may provide new…”
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Isometries of the hypercube: A tool for Boolean regulatory networks analysis by Fabre-Monplaisir, Jean, Mossé, Brigitte, Remy, Élisabeth

“…Boolean finite dynamical systems (FDS) are commonly used in systems biology to model the dynamics of intracellular regulatory networks and interpret the…”
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Formalizing and enriching phenotype signatures using Boolean networks by Wery, Méline, Dameron, Olivier, Nicolas, Jacques, Remy, Elisabeth, Siegel, Anne

“…In order to predict the behavior of a biological system, one common approach is to perform a simulation on a dynamic model. Boolean networks allow to analyze…”
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Estimating Attractor Reachability in Asynchronous Logical Models by Mendes, Nuno D, Henriques, Rui, Remy, Elisabeth, Carneiro, Jorge, Monteiro, Pedro T, Chaouiya, Claudine

“…Logical models are well-suited to capture salient dynamical properties of regulatory networks. For networks controlling cell fate decisions, cell fates are…”
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Observing System Evaluation Based on Ocean Data Assimilation and Prediction Systems: On-Going Challenges and a Future Vision for Designing and Supporting Ocean Observational Networks by Fujii, Yosuke, Rémy, Elisabeth, Zuo, Hao, Oke, Peter, Halliwell, George, Gasparin, Florent, Benkiran, Mounir, Loose, Nora, Cummings, James, Xie, Jiping, Xue, Yan, Masuda, Shuhei, Smith, Gregory C., Balmaseda, Magdalena, Germineaud, Cyril, Lea, Daniel J., Larnicol, Gilles, Bertino, Laurent, Bonaduce, Antonio, Brasseur, Pierre, Donlon, Craig, Heimbach, Patrick, Kim, YoungHo, Kourafalou, Villy, Le Traon, Pierre-Yves, Martin, Matthew, Paturi, Shastri, Tranchant, Benoit, Usui, Norihisa

“…This paper demonstrates the value of Observing System Evaluation (OS-Eval) efforts which have been made or are ongoing to contribute to observing system review…”
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From minimal signed circuits to the dynamics of Boolean regulatory networks by Remy, Elisabeth, Ruet, Paul

“…It is acknowledged that the presence of positive or negative circuits in regulatory networks such as genetic networks is linked to the emergence of significant…”
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The Benefits of the Ka-Band as Evidenced from the SARAL/AltiKa Altimetric Mission: Scientific Applications by Verron, Jacques, Bonnefond, Pascal, Aouf, Lofti, Birol, Florence, Bhowmick, Suchandra, Calmant, Stéphane, Conchy, Taina, Crétaux, Jean-François, Dibarboure, Gérald, Dubey, A., Faugère, Yannice, Guerreiro, Kevin, Gupta, P., Hamon, Mathieu, Jebri, Fatma, Kumar, Raj, Morrow, Rosemary, Pascual, Ananda, Pujol, Marie-Isabelle, Rémy, Elisabeth, Rémy, Frédérique, Smith, Walter, Tournadre, Jean, Vergara, Oscar

“…The India-France SARAL/AltiKa mission is the first Ka-band altimetric mission dedicated primarily to oceanography. The mission objectives were firstly the…”
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Analysis of a logical regulatory network reveals how Fe-S cluster biogenesis is controlled in the face of stress by Hammami, Firas, Tichit, Laurent, Py, Béatrice, Barras, Frédéric, Mandin, Pierre, Remy, Elisabeth

“…Abstract   Iron-sulfur (Fe-S) clusters are important cofactors conserved in all domains of life, yet their synthesis and stability are compromised in stressful…”
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Urban ecology, stakeholders and the future of ecology by Barot, Sébastien, Abbadie, Luc, Auclerc, Apolline, Barthélémy, Carole, Bérille, Etienne, Billet, Philippe, Clergeau, Philippe, Consales, Jean-Noël, Deschamp-Cottin, Magali, David, Ambre, Devigne, Cédric, Dham, Véronique, Dusza, Yann, Gaillard, Anne, Gonzalez, Emmanuelle, Hédont, Marianne, Labarraque, Dorothée, Le Bastard, Anne-Marie, Morel, Jean-Louis, Petit-Berghem, Yves, Rémy, Elisabeth, Rochelle-Newall, Emma, Veyrières, Marion

“…The world human population is more and more urban and cities have a strong impact on the biosphere. This explains the development of urban ecology. In this…”
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Integrative proteomic and phosphoproteomic profiling of prostate cell lines by Katsogiannou, Maria, Boyer, Jean-Baptiste, Valdeolivas, Alberto, Remy, Elisabeth, Calzone, Laurence, Audebert, Stéphane, Rocchi, Palma, Camoin, Luc, Baudot, Anaïs

“…Prostate cancer is a major public health issue, mainly because patients relapse after androgen deprivation therapy. Proteomic strategies, aiming to reflect the…”
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Impact of assimilating satellite surface velocity observations in the Mercator Ocean International analysis and forecasting global 1/4° system by Isabelle Mirouze, Elisabeth Rémy, Jean-Michel Lellouche, Matthew J. Martin, Craig J. Donlon

“…Representing and forecasting global ocean velocities is challenging. Velocity observations are scarce and sparse, and are rarely assimilated in a global ocean…”
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Single Cell Transcriptomics to Understand HSC Heterogeneity and Its Evolution upon Aging by Hérault, Léonard, Poplineau, Mathilde, Remy, Elisabeth, Duprez, Estelle

“…Single-cell transcriptomic technologies enable the uncovering and characterization of cellular heterogeneity and pave the way for studies aiming at…”
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High frequency radar error classification and prediction based on K-means methods by Wang, Zhaoyi, Drevillon, Marie, De Mey-Frémaux, Pierre, Remy, Elisabeth, Ayoub, Nadia, Wang, Dakui, Levier, Bruno

“…This study aims to characterize the high frequency radar and numerically simulated low-frequency filtered currents in the south-eastern Bay of Biscay (study…”
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The international multi-system OSEs/OSSEs by the UN Ocean Decade Project SynObs and its early results by Fujii, Yosuke, Remy, Elisabeth, Balmaseda, Magdalena Alonso, Kido, Shoichiro, Waters, Jennifer, Peterson, K. Andrew, Smith, Gregory C., Ishikawa, Ichiro, Chikhar, Kamel

“…“Synergistic Observing Network for Ocean Prediction (SynObs)” was launched in 2022 as a project of the United Nations Decade of Ocean Science for Sustainable…”
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Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling by Flobak, Åsmund, Baudot, Anaïs, Remy, Elisabeth, Thommesen, Liv, Thieffry, Denis, Kuiper, Martin, Lægreid, Astrid

“…Discovery of efficient anti-cancer drug combinations is a major challenge, since experimental testing of all possible combinations is clearly impossible…”
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Contribution of future wide-swath altimetry missions to ocean analysis and forecasting by Bonaduce, Antonio, Benkiran, Mounir, Remy, Elisabeth, Le Traon, Pierre Yves, Garric, Gilles

“…The impact of forthcoming wide-swath altimetry missions on the ocean analysis and forecasting system was investigated by means of OSSEs (observing system…”
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Sea Turtles for Ocean Research and Monitoring: Overview and Initial Results of the STORM Project in the Southwest Indian Ocean by Bousquet, Olivier, Dalleau, Mayeul, Bocquet, Marion, Gaspar, Philippe, Bielli, Soline, Ciccione, Stéphane, Remy, Elisabeth, Vidard, Arthur

“…Surface and sub-surface ocean temperature observations collected by sea turtles (ST) during the first phase (Jan-2019 – April 2020) of the Sea Turtle for Ocean…”
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Observing the full ocean volume using Deep Argo floats by Zilberman, Nathalie V., Thierry, Virginie, King, Brian, Alford, Matthew, André, Xavier, Balem, Kevin, Briggs, Nathan, Chen, Zhaohui, Cabanes, Cécile, Coppola, Laurent, Dall’Olmo, Giorgio, Desbruyères, Damien, Fernandez, Denise, Foppert, Annie, Gardner, Wilford, Gasparin, Florent, Hally, Bryan, Hosoda, Shigeki, Johnson, Gregory C., Kobayashi, Taiyo, Le Boyer, Arnaud, Llovel, William, Oke, Peter, Purkey, Sarah, Remy, Elisabeth, Roemmich, Dean, Scanderbeg, Megan, Sutton, Philip, Walicka, Kamila, Wallace, Luke, van Wijk, Esmee M.

“…The ocean is the main heat reservoir in Earth’s climate system, absorbing most of the top-of-the-atmosphere excess radiation. As the climate warms, anomalously…”
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