Search Results - "Reiser, Leonore"

The arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome by Berardini, Tanya Z., Reiser, Leonore, Li, Donghui, Mezheritsky, Yarik, Muller, Robert, Strait, Emily, Huala, Eva

“…Summary The Arabidopsis Information Resource (TAIR) is a continuously updated, online database of genetic and molecular biology data for the model plant…”
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Functional annotation of the Arabidopsis genome using controlled vocabularies by Berardini, T.Z, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, L.A, Yoon, J, Doyle, A, Lander, G

“…Controlled vocabularies are increasingly used by databases to describe genes and gene products because they facilitate identification of similar genes within…”
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Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations by Avraham, Shulamit, Tung, Chih-Wei, Ilic, Katica, Jaiswal, Pankaj, Kellogg, Elizabeth A, McCouch, Susan, Pujar, Anuradha, Reiser, Leonore, Rhee, Seung Y, Sachs, Martin M, Schaeffer, Mary, Stein, Lincoln, Stevens, Peter, Vincent, Leszek, Zapata, Felipe, Ware, Doreen

“…The Plant Ontology Consortium (POC, http://www.plantontology.org) is a collaborative effort among model plant genome databases and plant researchers that aims…”
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Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI) by Toro, Sabrina, Anagnostopoulos, Anna V, Bello, Susan M, Blumberg, Kai, Cameron, Rhiannon, Carmody, Leigh, Diehl, Alexander D, Dooley, Damion M, Duncan, William D, Fey, Petra, Gaudet, Pascale, Harris, Nomi L, Joachimiak, Marcin P, Kiani, Leila, Lubiana, Tiago, Munoz-Torres, Monica C, O'Neil, Shawn, Osumi-Sutherland, David, Puig-Barbe, Aleix, Reese, Justin T, Reiser, Leonore, Robb, Sofia Mc, Ruemping, Troy, Seager, James, Sid, Eric, Stefancsik, Ray, Weber, Magalie, Wood, Valerie, Haendel, Melissa A, Mungall, Christopher J

“…Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus…”
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Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model by Reiser, Leonore, Berardini, Tanya Z, Li, Donghui, Muller, Robert, Strait, Emily M, Li, Qian, Mezheritsky, Yarik, Vetushko, Andrey, Huala, Eva

“…Databases and data repositories provide essential functions for the research community by integrating, curating, archiving and otherwise packaging data to…”
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Shoot meristem size is dependent on inbred background and presence of the maize homeobox gene, knotted1 by Vollbrecht, E, Reiser, L, Hake, S

“…The knotted1 (kn1) gene of maize is expressed in meristems and is absent from leaves, including the site of leaf initiation within the meristem. Recessive…”
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Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant by Ilic, Katica, Kellogg, Elizabeth A, Jaiswal, Pankaj, Zapata, Felipe, Stevens, Peter F, Vincent, Leszek P, Avraham, Shulamit, Reiser, Leonore, Pujar, Anuradha, Sachs, Martin M, Whitman, Noah T, McCouch, Susan R, Schaeffer, Mary L, Ware, Doreen H, Stein, Lincoln D, Rhee, Seung Y

“…Formal description of plant phenotypes and standardized annotation of gene expression and protein localization data require uniform terminology that accurately…”
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Knots in the family tree: evolutionary relationships and functions of knox homeobox genes by Reiser, L, Sánchez-Baracaldo, P, Hake, S

“…Knotted-like homeobox (knox) genes constitute a gene family in plants. Class I knox genes are expressed in shoot apical meristems, and (with notable…”
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Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology by Pujar, Anuradha, Jaiswal, Pankaj, Kellogg, Elizabeth A., Ilic, Katica, Vincent, Leszek, Avraham, Shulamit, Stevens, Peter, Zapata, Felipe, Reiser, Leonore, Rhee, Seung Y., Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Ware, Doreen, McCouch, Susan

“…Plant growth stages are identified as distinct morphological landmarks in a continuous developmental process. The terms describing these developmental stages…”
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Using the Arabidopsis information resource (TAIR) to find information about Arabidopsis genes by Lamesch, Philippe, Dreher, Kate, Swarbreck, David, Sasidharan, Rajkumar, Reiser, Leonore, Huala, Eva

“…The Arabidopsis Information Resource (TAIR; http://arabidopsis.org) is a comprehensive Web resource of Arabidopsis biology for plant scientists. TAIR curates…”
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The Arabidopsis Information Resource in 2024 by Reiser, Leonore, Bakker, Erica, Subramaniam, Sabarinath, Chen, Xingguo, Sawant, Swapnil, Khosa, Kartik, Prithvi, Trilok, Berardini, Tanya Z

“…Since 1999, The Arabidopsis Information Resource (www.arabidopsis.org) has been curating data about the Arabidopsis thaliana genome. Its primary focus is…”
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FAIR: A Call to Make Published Data More Findable, Accessible, Interoperable, and Reusable by Reiser, Leonore, Harper, Lisa, Freeling, Michael, Han, Bin, Luan, Sheng

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Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes by Reiser, Leonore, Subramaniam, Shabari, Li, Donghui, Huala, Eva

“…The Arabidopsis Information Resource (TAIR; http://arabidopsis.org) is a comprehensive Web resource of Arabidopsis biology for plant scientists. TAIR curates…”
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An updated nomenclature for plant ribosomal protein genes by Scarpin, M Regina, Busche, Michael, Martinez, Ryan E, Harper, Lisa C, Reiser, Leonore, Szakonyi, Dóra, Merchante, Catharina, Lan, Ting, Xiong, Wei, Mo, Beixin, Tang, Guiliang, Chen, Xuemei, Bailey-Serres, Julia, Browning, Karen S, Brunkard, Jacob O

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PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference by Zhang, Peifen, Berardini, Tanya Z., Ebert, Dustin, Li, Qian, Mi, Huaiyu, Muruganujan, Anushya, Prithvi, Trilok, Reiser, Leonore, Sawant, Swapnil, Thomas, Paul D., Huala, Eva

“…We aim to enable the accurate and efficient transfer of knowledge about gene function gained from Arabidopsis thaliana and other model organisms to other plant…”
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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture by Harper, Lisa, Campbell, Jacqueline, Cannon, Ethalinda K S, Jung, Sook, Poelchau, Monica, Walls, Ramona, Andorf, Carson, Arnaud, Elizabeth, Berardini, Tanya Z, Birkett, Clayton, Cannon, Steve, Carson, James, Condon, Bradford, Cooper, Laurel, Dunn, Nathan, Elsik, Christine G, Farmer, Andrew, Ficklin, Stephen P, Grant, David, Grau, Emily, Herndon, Nic, Hu, Zhi-Liang, Humann, Jodi, Jaiswal, Pankaj, Jonquet, Clement, Laporte, Marie-Angélique, Larmande, Pierre, Lazo, Gerard, McCarthy, Fiona, Menda, Naama, Mungall, Christopher J, Munoz-Torres, Monica C, Naithani, Sushma, Nelson, Rex, Nesdill, Daureen, Park, Carissa, Reecy, James, Reiser, Leonore, Sanderson, Lacey-Anne, Sen, Taner Z, Staton, Margaret, Subramaniam, Sabarinath, Tello-Ruiz, Marcela Karey, Unda, Victor, Unni, Deepak, Wang, Liya, Ware, Doreen, Wegrzyn, Jill, Williams, Jason, Woodhouse, Margaret, Yu, Jing, Main, Doreen

“…The future of agricultural research depends on data. The sheer volume of agricultural biological data being produced today makes excellent data management…”
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The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community by Rhee, Seung Yon, Beavis, William, Berardini, Tanya Z., Chen, Guanghong, Dixon, David, Doyle, Aisling, Garcia-Hernandez, Margarita, Huala, Eva, Lander, Gabriel, Montoya, Mary, Miller, Neil, Mueller, Lukas A., Mundodi, Suparna, Reiser, Leonore, Tacklind, Julie, Weems, Dan C., Wu, Yihe, Xu, Iris, Yoo, Daniel, Yoon, Jungwon, Zhang, Peifen

“…Arabidopsis thaliana is the most widely-studied plant today. The concerted efforts of over 11 000 researchers and 4000 organizations around the world are…”
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Annotation of gene product function from high-throughput studies using the Gene Ontology by Attrill, Helen, Gaudet, Pascale, Huntley, Rachael P, Lovering, Ruth C, Engel, Stacia R, Poux, Sylvain, Van Auken, Kimberly M, Georghiou, George, Chibucos, Marcus C, Berardini, Tanya Z, Wood, Valerie, Drabkin, Harold, Fey, Petra, Garmiri, Penelope, Harris, Midori A, Sawford, Tony, Reiser, Leonore, Tauber, Rebecca, Toro, Sabrina

“…Abstract High-throughput studies constitute an essential and valued source of information for researchers. However, high-throughput experimental workflows are…”
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The AINTEGUMENTA Gene of Arabidopsis Required for Ovule and Female Gametophyte Development Is Related to the Floral Homeotic Gene APETALA2 by Klucher, Kevin M., Chow, Helen, Reiser, Leonore, Fischer, Robert L.

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Plant Ontology (PO): a controlled vocabulary of plant structures and growth stages by Jaiswal, Pankaj, Avraham, Shulamit, Ilic, Katica, Kellogg, Elizabeth A, McCouch, Susan, Pujar, Anuradha, Reiser, Leonore, Rhee, Seung Y, Sachs, Martin M., Schaeffer, Mary, Stein, Lincoln, Stevens, Peter, Vincent, Leszek, Ware, Doreen, Zapata, Felipe

“…The Plant Ontology Consortium (POC) (www.plantontology.org) is a collaborative effort among several plant databases and experts in plant systematics, botany…”
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