Search Results - "Reis, Marcelo S."

Autophagy buffers Ras-induced genotoxic stress enabling malignant transformation in keratinocytes primed by human papillomavirus by Cararo-Lopes, Eduardo, Dias, Matheus H., da Silva, Marcelo S., Zeidler, Julianna D., Vessoni, Alexandre T., Reis, Marcelo S., Boccardo, Enrique, Armelin, Hugo A.

“…Malignant transformation involves an orchestrated rearrangement of cell cycle regulation mechanisms that must balance autonomic mitogenic impulses and…”
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An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection by Estrela, Gustavo, Gubitoso, Marco Dimas, Ferreira, Carlos Eduardo, Barrera, Junior, Reis, Marcelo S.

“…In Machine Learning, feature selection is an important step in classifier design. It consists of finding a subset of features that is optimum for a given cost…”
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Correction: Autophagy buffers Ras-induced genotoxic stress enabling malignant transformation in keratinocytes primed by human papillomavirus by Cararo-Lopes, Eduardo, Dias, Matheus H., da Silva, Marcelo S., Zeidler, Julianna D., Vessoni, Alexandre T., Reis, Marcelo S., Boccardo, Enrique, Armelin, Hugo A.

“…A Correction to this paper has been published: https://doi.org/10.1038/s41419-021-03564-4…”
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Fibroblast Growth Factor 2 lethally sensitizes cancer cells to stress‐targeted therapeutic inhibitors by Dias, Matheus H., Fonseca, Cecília S., Zeidler, Julianna D., Albuquerque, Layra L., Silva, Marcelo S., Cararo‐Lopes, Eduardo, Reis, Marcelo S., Noël, Vincent, Santos, Edmilson O., Prior, Ian A., Armelin, Hugo A.

“…In malignant transformation, cellular stress‐response pathways are dynamically mobilized to counterbalance oncogenic activity, keeping cancer cells viable…”
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A New Approach for Identification of Cancer-related Pathways using Protein Networks and Genomic Data by Fonseca, André, Gubitoso, Marco D., Reis, Marcelo S., De Souza, Sandro J., Barrera, Junior

“…Cancer cells have anomalous development and proliferation due to disturbances in their control systems. The study of the behavior of cellular control system…”
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Human Rights for Children and Youth: Sociocultural Differentiation, Resistance and Unity by Reis, Magali, Isidório, Marcelo S

“…This volume, written by experts in the field across 3 different continents, explores the condition of childhood with a particular focus on the fundamental…”
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Natural infection of Nicandra physaloides by Tomato severe rugose virus in Brazil by Barbosa, J.C., Universidade de Sao Paulo (Brazil), Barreto, S.S, Inoue Nagata, A.K, Reis, M.S, Firmino, A.C, Filho, A.B, Rezende, J.A.M

“…Nicandra physaloides, a common weed in South America, was found to be infected by an isolate of Tomato severe rugose virus (ToSRV), a bipartite begomovirus…”
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Transcription activity contributes to the firing of non-constitutive origins in African trypanosomes helping to maintain robustness in S-phase duration by da Silva, Marcelo S., Cayres-Silva, Gustavo R., Vitarelli, Marcela O., Marin, Paula A., Hiraiwa, Priscila M., Araújo, Christiane B., Scholl, Bruno B., Ávila, Andrea R., McCulloch, Richard, Reis, Marcelo S., Elias, Maria Carolina

“…The co-synthesis of DNA and RNA potentially generates conflicts between replication and transcription, which can lead to genomic instability. In…”
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Proteomic and Glycoproteomic Profilings Reveal That Post-translational Modifications of Toxins Contribute to Venom Phenotype in Snakes by Andrade-Silva, Débora, Zelanis, André, Kitano, Eduardo S, Junqueira-de-Azevedo, Inácio L. M, Reis, Marcelo S, Lopes, Aline S, Serrano, Solange M. T

“…Snake venoms are biological weapon systems composed of secreted proteins and peptides that are used for immobilizing or killing prey. Although…”
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Comparative analysis of the high molecular mass subproteomes of eight Bothrops snake venoms by Gren, Eric C.K., Kitano, Eduardo S., Andrade-Silva, Débora, Iwai, Leo Kei, Reis, Marcelo S., Menezes, Milene C., Serrano, Solange M.T.

“…Snake venoms are extremely active biological secretions composed primarily of various classes of enzymes. The genus Bothrops comprises various pit viper…”
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From Mathematical Morphology to machine learning of image operators by Barrera, Junior, Hashimoto, Ronaldo F., Hirata, Nina S. T., Hirata, R., Reis, Marcelo S.

“…Morphological image operators are a class of non-linear image mappings studied in Mathematical Morphology. Many significant theoretical results regarding the…”
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An Interdisciplinary Approach for Designing Kinetic Models of the Ras/MAPK Signaling Pathway by Reis, Marcelo S, Noël, Vincent, Dias, Matheus H, Albuquerque, Layra L, Guimarães, Amanda S, Wu, Lulu, Barrera, Junior, Armelin, Hugo A

“…We present in this article a methodology for designing kinetic models of molecular signaling networks, which was exemplarily applied for modeling one of the…”
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featsel: A framework for benchmarking of feature selection algorithms and cost functions by Reis, Marcelo S., Estrela, Gustavo, Ferreira, Carlos Eduardo, Barrera, Junior

“…In this paper, we introduce featsel, a framework for benchmarking of feature selection algorithms and cost functions. This framework allows the user to deal…”
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A New Approach for Identification of Cancer-related Pathways using Protein Networks and Genomic Data by Fonseca, André, Gubitoso, Marco D., Reis, Marcelo S., de Souza, Sandro J., Barrera, Junior

“…Cancer cells have anomalous development and proliferation due to disturbances in their control systems. The study of the behavior of cellular control system…”
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Anguix: Cell Signaling Modeling Improvement through Sabio-RK association to Reactome by Montoni, Fabio, De Sousa, Ronaldo N., De Lima Junior, Marcelo B., Campos, Cristiano G.S., Wang, Willian, Constantino, Vivian M., Sanctos, Cassia S., Armelin, Hugo A., Reis, Marcelo S.

“…Kinetics of biochemical reactions are widely spread in scientific papers and repositories such as Sabio-RK. This information is extremely important for the…”
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Bioinfomatics for the Citrus EST Project (CitEST) by Marcelo S. Reis, Marco A. Takita, Darío A. Palmieri, Marcos A. Machado

“…In this work we describe all the computational environments, pipelines, and web services developed for the CitEST transcriptome project, on which all the…”
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In silico analysis of ESTs from roots of Rangpur lime (Citrus limonia Osbeck) under water stress by Boscariol-Camargo, Raquel L., Berger, Irving J., Souza, Alessandra A., Amaral, Alexandre M. do, Carlos, Eduardo F., Freitas-Astúa, Juliana, Takita, Marco A., Targon, Maria Luisa P.N., Medina, Camilo L., Reis, Marcelo S., Machado, Marcos A.

“…CitEST project resulted in the construction of cDNA libraries from different Citrus sp. tissues under various physiological conditions. Among them, plantlets…”
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A fast Branch-and-Bound algorithm for U-curve feature selection by Atashpaz-Gargari, Esmaeil, Reis, Marcelo S., Braga-Neto, Ulisses M., Barrera, Junior, Dougherty, Edward R.

“…•We introduce a fast Branch-and-Bound algorithm for optimal feature selection.•The proposed algorithm is based on a U-curve assumption on the cost…”
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Optimal Boolean lattice-based algorithms for the U-curve optimization problem by Reis, Marcelo S., Estrela, Gustavo, Ferreira, Carlos Eduardo, Barrera, Junior

“…•The U-curve problem can be used to model feature selection.•We pointed out an error in the first algorithm proposed to solve the U-curve problem.•We…”
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Differential expression of genes identified from Poncirus trifoliata tissue inoculated with CTV through EST analysis and in silico hybridization by Cristofani-Yaly, Mariângela, Berger, Irving J., Targon, Maria Luisa P.N., Takita, Marco A., Dorta, Sílvia de O., Freitas-Astúa, Juliana, Souza, Alessandra A. de, Boscariol-Camargo, Raquel L., Reis, Marcelo S., Machado, Marcos A.

“…Citrus is the most important fruit crop in Brazil and Citrus tristeza virus (CTV) is considered one of the most important pathogens of citrus. Most citrus…”
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