Search Results - "Reese, Fairlie"

L-GIREMI uncovers RNA editing sites in long-read RNA-seq by Liu, Zhiheng, Quinones-Valdez, Giovanni, Fu, Ting, Huang, Elaine, Choudhury, Mudra, Reese, Fairlie, Mortazavi, Ali, Xiao, Xinshu

“…Although long-read RNA-seq is increasingly applied to characterize full-length transcripts it can also enable detection of nucleotide variants, such as genetic…”
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Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq by Rebboah, Elisabeth, Reese, Fairlie, Williams, Katherine, Balderrama-Gutierrez, Gabriela, McGill, Cassandra, Trout, Diane, Rodriguez, Isaryhia, Liang, Heidi, Wold, Barbara J, Mortazavi, Ali

“…The rise in throughput and quality of long-read sequencing should allow unambiguous identification of full-length transcript isoforms. However, its application…”
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Long-Term Patterns of Noise From Underwater Explosions and Their Relation to Fisheries in Southern California by Krumpel, Anna, Rice, Ally, Frasier, Kaitlin E., Reese, Fairlie, Trickey, Jennifer S., Simonis, Anne E., Ryan, John P., Wiggins, Sean M., Denzinger, Annette, Schnitzler, Hans-Ulrich, Baumann-Pickering, Simone

“…Acoustic deterrents can reduce marine mammal interactions with fisheries and aquacultures, but they contribute to an increasing level of underwater noise. In…”
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Swan: a library for the analysis and visualization of long-read transcriptomes by Reese, Fairlie, Mortazavi, Ali

“…Abstract Motivation Long-read RNA-sequencing technologies such as PacBio and Oxford Nanopore have discovered an explosion of new transcript isoforms that are…”
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hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data by Morabito, Samuel, Reese, Fairlie, Rahimzadeh, Negin, Miyoshi, Emily, Swarup, Vivek

“…Biological systems are immensely complex, organized into a multi-scale hierarchy of functional units based on tightly regulated interactions between distinct…”
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Characterizing Transcript Diversity Using Long-Read RNA Sequencing by Reese, Fairlie

“…Alternative transcripts arise from the same gene via alternative TSS usage, splicing, and polyA site choice. Such transcripts can give rise to functional…”
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Exon size and sequence conservation improves identification of splice-altering nucleotides by Movassat, Maliheh, Forouzmand, Elmira, Reese, Fairlie, Hertel, Klemens J

“…Pre-mRNA splicing is regulated through multiple -acting splicing factors. These regulators interact with the pre-mRNA at intronic and exonic positions. Given…”
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Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types by Moore, Jill E, Zhang, Xiao-Ou, Elhajjajy, Shaimae I, Fan, Kaili, Pratt, Henry E, Reese, Fairlie, Mortazavi, Ali, Weng, Zhiping

“…Accurate transcription start site (TSS) annotations are essential for understanding transcriptional regulation and its role in human disease. Gene collections…”
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Relapse to cocaine seeking is regulated by medial habenula NR4A2/NURR1 in mice by Childs, Jessica E., Morabito, Samuel, Das, Sudeshna, Santelli, Caterina, Pham, Victoria, Kusche, Kelly, Alizo Vera, Vanessa, Reese, Fairlie, Campbell, Rianne R., Matheos, Dina P., Swarup, Vivek, Wood, Marcelo A.

“…Drugs of abuse can persistently change the reward circuit in ways that contribute to relapse behavior, partly via mechanisms that regulate chromatin structure…”
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