Search Results - "Read, Elizabeth L"

Pathways of Energy Flow in LHCII from Two-Dimensional Electronic Spectroscopy by Schlau-Cohen, Gabriela S, Calhoun, Tessa R, Ginsberg, Naomi S, Read, Elizabeth L, Ballottari, Matteo, Bassi, Roberto, van Grondelle, Rienk, Fleming, Graham R

“…Photosynthetic light-harvesting complexes absorb energy and guide photoexcitations to reaction centers with speed and efficacy that produce near-perfect…”
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Stochastic modeling reveals kinetic heterogeneity in post-replication DNA methylation by Busto-Moner, Luis, Morival, Julien, Ren, Honglei, Fahim, Arjang, Reitz, Zachary, Downing, Timothy L, Read, Elizabeth L

“…DNA methylation is a heritable epigenetic modification that plays an essential role in mammalian development. Genomic methylation patterns are dynamically…”
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Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length by Liu, Kai, Chu, Brian, Newby, Jay, Read, Elizabeth L, Lowengrub, John, Allard, Jun

“…In many biological settings, two or more cells come into physical contact to form a cell-cell interface. In some cases, the cell-cell contact must be…”
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Rare-event sampling of epigenetic landscapes and phenotype transitions by Tse, Margaret J, Chu, Brian K, Gallivan, Cameron P, Read, Elizabeth L

“…Stochastic simulation has been a powerful tool for studying the dynamics of gene regulatory networks, particularly in terms of understanding how cell-phenotype…”
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DNA-Binding Kinetics Determines the Mechanism of Noise-Induced Switching in Gene Networks by Tse, Margaret J., Chu, Brian K., Roy, Mahua, Read, Elizabeth L.

“…Gene regulatory networks are multistable dynamical systems in which attractor states represent cell phenotypes. Spontaneous, noise-induced transitions between…”
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Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development by Gallivan, Cameron P, Ren, Honglei, Read, Elizabeth L

“…Single-cell transcriptomics is advancing discovery of the molecular determinants of cell identity, while spurring development of novel data analysis methods…”
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Two-Dimensional Electronic Spectroscopy of the B800-B820 Light-Harvesting Complex by Zigmantas, Donatas, Read, Elizabeth L., Mančal, Tomáš, Brixner, Tobias, Gardiner, Alastair T., Cogdell, Richard J., Fleming, Graham R.

“…Emerging nonlinear optical spectroscopies enable deeper insight into the intricate world of interactions and dynamics of complex molecular systems. 2D…”
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Cross-peak-specific two-dimensional electronic spectroscopy by Read, Elizabeth L, Engel, Gregory S, Calhoun, Tessa R, Mančal, Tomáš, Ahn, Tae Kyu, Blankenship, Robert E, Fleming, Graham R

“…Intermolecular electronic coupling dictates the optical properties of molecular aggregate systems. Of particular interest are photosynthetic pigment-protein…”
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Visualization of Excitonic Structure in the Fenna-Matthews-Olson Photosynthetic Complex by Polarization-Dependent Two-Dimensional Electronic Spectroscopy by Read, Elizabeth L., Schlau-Cohen, Gabriela S., Engel, Gregory S., Wen, Jianzhong, Blankenship, Robert E., Fleming, Graham R.

“…Photosynthetic light-harvesting proceeds by the collection and highly efficient transfer of energy through a network of pigment-protein complexes…”
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Stochastic effects are important in intrahost HIV evolution even when viral loads are high by Read, Elizabeth L, Tovo-Dwyer, Allison A, Chakraborty, Arup K

“…Blood plasma viral loads and the time to progress to AIDS differ widely among untreated HIV-infected humans. Although people with certain HLA (HLA-I) alleles…”
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Simulation of receptor triggering by kinetic segregation shows role of oligomers and close contacts by Taylor, Robert, Allard, Jun, Read, Elizabeth L.

“…The activation of T cells, key players of the immune system, involves local evacuation of phosphatase CD45 from a region of the T cell’s surface, segregating…”
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Regulation of macrophage polarization and plasticity by complex activation signals by Smith, Tim D, Tse, Margaret J, Read, Elizabeth L, Liu, Wendy F

“…Macrophages are versatile cells of the immune system that play an important role in both advancing and resolving inflammation. Macrophage activation has been…”
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Locally correlated kinetics of post-replication DNA methylation reveals processivity and region specificity in DNA methylation maintenance by Ren, Honglei, Taylor, Robert B, Downing, Timothy L, Read, Elizabeth L

“…DNA methylation occurs predominantly on cytosine-phosphate-guanine (CpG) dinucleotides in the mammalian genome, and the methylation landscape is maintained…”
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Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems by Fleming, Graham R, Engel, Gregory S, Calhoun, Tessa R, Read, Elizabeth L, Ahn, Tae-Kyu, Man al, Tomáš, Cheng, Yuan-Chung, Blankenship, Robert E

“…Photosynthetic complexes are exquisitely tuned to capture solar light efficiently, and then transmit the excitation energy to reaction centres, where long term…”
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Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection by Carrington, Mary, Walker, Bruce D, Deeks, Steven G, Chakraborty, Arup K, Košmrlj, Andrej, Pereyra, Florencia, Allen, Todd M, Altfeld, Marcus, Read, Elizabeth L, Qi, Ying

“…Without therapy, most people infected with human immunodeficiency virus (HIV) ultimately progress to AIDS. Rare individuals ('elite controllers') maintain very…”
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Solving Immunology? by Vodovotz, Yoram, Xia, Ashley, Read, Elizabeth L, Bassaganya-Riera, Josep, Hafler, David A, Sontag, Eduardo, Wang, Jin, Tsang, John S, Day, Judy D, Kleinstein, Steven H, Butte, Atul J, Altman, Matthew C, Hammond, Ross, Sealfon, Stuart C

“…Emergent responses of the immune system result from the integration of molecular and cellular networks over time and across multiple organs. High-content and…”
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Hypoxia induces lytic replication of Kaposi sarcoma–associated herpesvirus by Davis, David A., Rinderknecht, Andrea S., Zoeteweij, J. Paul, Aoki, Yoshiyasu, Read-Connole, Elizabeth L., Tosato, Giovanna, Blauvelt, Andrew, Yarchoan, Robert

“…There is substantial evidence that Kaposi sarcoma–associated herpesvirus (KSHV) plays an important role in the pathogenesis of all forms of Kaposi sarcoma…”
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Markov State Models of gene regulatory networks by Chu, Brian K, Tse, Margaret J, Sato, Royce R, Read, Elizabeth L

“…Gene regulatory networks with dynamics characterized by multiple stable states underlie cell fate-decisions. Quantitative models that can link molecular-level…”
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Photon echo studies of photosynthetic light harvesting by Read, Elizabeth L, Lee, Hohjai, Fleming, Graham R

“…The broad linewidths in absorption spectra of photosynthetic complexes obscure information related to their structure and function. Photon echo techniques…”
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Pigment Organization and Energy Level Structure in Light-Harvesting Complex 4: Insights from Two-Dimensional Electronic Spectroscopy by Read, Elizabeth L, Schlau-Cohen, Gabriela S, Engel, Gregory S, Georgiou, Toni, Papiz, Miroslav Z, Fleming, Graham R

“…Photosynthetic light-harvesting antennae direct energy collected from sunlight to reaction centers with remarkable efficiency and rapidity. Despite their…”
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