Search Results - "Rayko, Edda"

Transcription factor families inferred from genome sequences of photosynthetic stramenopiles by Rayko, Edda, Maumus, Florian, Maheswari, Uma, Jabbari, Kamel, Bowler, Chris

“…By comparative analyses we identify lineage-specific diversity in transcription factors (TFs) from stramenopile (or heterokont) genome sequences. We compared a…”
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Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling by Huysman, Marie J J, Martens, Cindy, Vandepoele, Klaas, Gillard, Jeroen, Rayko, Edda, Heijde, Marc, Bowler, Chris, Inzé, Dirk, Van de Peer, Yves, De Veylder, Lieven, Vyverman, Wim

“…Despite the enormous importance of diatoms in aquatic ecosystems and their broad industrial potential, little is known about their life cycle control. Diatoms…”
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IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOM THALASSIOSIRA PSEUDONANA1 by Montsant, Anton, Allen, Andrew E., Coesel, Sacha, Martino, Alessandra De, Falciatore, Angela, Mangogna, Manuela, Siaut, Magali, Heijde, Marc, Jabbari, Kamel, Maheswari, Uma, Rayko, Edda, Vardi, Assaf, Apt, Kirk E., Berges, John A., Chiovitti, Anthony, Davis, Aubrey K., Thamatrakoln, Kimberlee, Hadi, Masood Z., Lane, Todd W., Lippmeier, J. Casey, Martinez, Diego, Parker, Micaela S., Pazour, Gregory J., Saito, Mak A., Rokhsar, Dan S., Armbrust, E. Virginia, Bowler, Chris

“…Diatoms are unicellular brown algae that likely arose from the endocytobiosis of a red alga into a single‐celled heterotroph and that constitute an algal class…”
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Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum by Veluchamy, Alaguraj, Lin, Xin, Maumus, Florian, Rivarola, Maximo, Bhavsar, Jaysheel, Creasy, Todd, O’Brien, Kimberly, Sengamalay, Naomi A., Tallon, Luke J., Smith, Andrew D., Rayko, Edda, Ahmed, Ikhlak, Crom, Stéphane Le, Farrant, Gregory K., Sgro, Jean-Yves, Olson, Sue A., Bondurant, Sandra Splinter, Allen, Andrew E., Rabinowicz, Pablo D., Sussman, Michael R., Bowler, Chris, Tirichine, Leïla

“…DNA cytosine methylation is a widely conserved epigenetic mark in eukaryotes that appears to have critical roles in the regulation of genome structure and…”
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes by Bowler, Chris, Allen, Andrew E, Badger, Jonathan H, Grimwood, Jane, Jabbari, Kamel, Kuo, Alan, Maheswari, Uma, Martens, Cindy, Maumus, Florian, Otillar, Robert P, Rayko, Edda, Salamov, Asaf, Vandepoele, Klaas, Beszteri, Bank, Gruber, Ansgar, Heijde, Marc, Katinka, Michael, Mock, Thomas, Valentin, Klaus, Verret, Fréderic, Berges, John A, Brownlee, Colin, Cadoret, Jean-Paul, Chiovitti, Anthony, Choi, Chang Jae, Coesel, Sacha, De Martino, Alessandra, Detter, J. Chris, Durkin, Colleen, Falciatore, Angela, Fournet, Jérome, Haruta, Miyoshi, Huysman, Marie J. J, Jenkins, Bethany D, Jiroutova, Katerina, Jorgensen, Richard E, Joubert, Yolaine, Kaplan, Aaron, Kröger, Nils, Kroth, Peter G, La Roche, Julie, Lindquist, Erica, Lommer, Markus, Martin-Jézéquel, Véronique, Lopez, Pascal J, Lucas, Susan, Mangogna, Manuela, McGinnis, Karen, Medlin, Linda K, Montsant, Anton, Secq, Marie-Pierre Oudot-Le, Napoli, Carolyn, Obornik, Miroslav, Parker, Micaela Schnitzler, Petit, Jean-Louis, Porcel, Betina M, Poulsen, Nicole, Robison, Matthew, Rychlewski, Leszek, Rynearson, Tatiana A, Schmutz, Jeremy, Shapiro, Harris, Siaut, Magali, Stanley, Michele, Sussman, Michael R, Taylor, Alison R, Vardi, Assaf, von Dassow, Peter, Vyverman, Wim, Willis, Anusuya, Wyrwicz, Lucjan S, Rokhsar, Daniel S, Weissenbach, Jean, Armbrust, E. Virginia, Green, Beverley R, Van de Peer, Yves, Grigoriev, Igor V

“…Diatoms are photosynthetic secondary endosymbionts found throughout marine and freshwater environments, and are believed to be responsible for around one-fifth…”
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Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana by Montsant, Anton, Allen, Andrew E, Coesel, Sacha, Martino, Alessandra De, Falciatore, Angela, Mangogna, Manuela, Siaut, Magali, Heijde, Marc, Jabbari, Kamel, Maheswari, Uma, Rayko, Edda, Vardi, Assaf, Apt, Kirk E, Berges, John A, Chiovitti, Anthony, Davis, Aubrey K, Thamatrakoln, Kimberlee, Hadi, Masood Z, Lane, Todd W, Lippmeier, J. Casey, Martinez, Diego, Parker, Micaela S, Pazour, Gregory J, Saito, Mak A, Rokhsar, Dan S, Armbrust, E. Virginia, Bowler, Chris

“…Diatoms are unicellular brown algae that likely arose from the endocytobiosis of a red alga into a single-celled heterotroph and that constitute an algal class…”
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Correction: Corrigendum: Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum by Veluchamy, Alaguraj, Lin, Xin, Maumus, Florian, Rivarola, Maximo, Bhavsar, Jaysheel, Creasy, Todd, O’Brien, Kimberly, Sengamalay, Naomi A., Tallon, Luke J., Smith, Andrew D., Rayko, Edda, Ahmed, Ikhlak, Crom, Stéphane Le, Farrant, Gregory K., Sgro, Jean-Yves, Olson, Sue A., Bondurant, Sandra Splinter, Allen, Andrew E., Rabinowicz, Pablo D., Sussman, Michael R., Bowler, Chris, Tirichine, Leïla

“…Nature Communications 4: Article number: 2091 (2013); Published: 2 July 2013; Updated: 6 January 2014. In the original version of this Article, the middle…”
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Corrigendum: Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum by Veluchamy, Alaguraj, Lin, Xin, Maumus, Florian, Rivarola, Maximo, Bhavsar, Jaysheel, Creasy, Todd, O'brien, Kimberly, Sengamalay, Naomi A, Tallon, Luke J, Smith, Andrew D, Rayko, Edda, Ahmed, Ikhlak, Crom, Stéphane Le, Farrant, Gregory K, Sgro, Jean-yves, Olson, Sue A, Bondurant, Sandra Splinter, Allen, Andrew E, Rabinowicz, Pablo D, Sussman, Michael R, Bowler, Chris, Tirichine, Leïla

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The evolution of introns in human duplicated genes by Rayko, Edda, Jabbari, Kamel, Bernardi, Giorgio

“…In previous work [Jabbari, K., Rayko, E., Bernardi, G., 2003. The major shifts of human duplicated genes. Gene 317, 203–208], we investigated the fate of…”
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Organization, generation and replication of amphimeric genomes: a review by Rayko, Edda

“…Genomes comprising a pair of separated inverted repeats and called `amphimers' are reviewed. Amphimeric genomes are observed in a large variety of different…”
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The major shifts of human duplicated genes by Jabbari, Kamel, Rayko, Edda, Bernardi, Giorgio

“…Since many gene duplications in the human genome are ancient duplications going back to the origin of vertebrates, the question may be asked about the fate of…”
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THALASSIOSIRA PSEUDONANA by Anton,Montsant, Andrew E.,Allen, Sacha,Coesel, Alessandra De,Martino, Angela,Falciatore, Manuela,Mangogna, Magali,Siaut, Marc,Heijde, Kamel,Jabbari, Uma,Maheswari, Edda,Rayko, Assaf,Vardi, Kirk E.,Apt, John A.,Berges, Anthony,Chiovitti, Aubrey K.,Davis, Kimberlee,Thamatrakoln, Masood Z.,Hadi, Todd W.,Lane, J. Casey,Lippmeier, Diego,Martinez, Micaela S.,Parker, Gregory J.,Pazour, Mak A.,Saito, Dan S.,Rokhsar, E. Virginia,Armbrust, Chris,Bowler

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IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOM THALASSIOSIRA PSEUDONANA 1 by Montsant, Anton, Allen, Andrew E., Coesel, Sacha, Martino, Alessandra De, Falciatore, Angela, Mangogna, Manuela, Siaut, Magali, Heijde, Marc, Jabbari, Kamel, Maheswari, Uma, Rayko, Edda, Vardi, Assaf, Apt, Kirk E., Berges, John A., Chiovitti, Anthony, Davis, Aubrey K., Thamatrakoln, Kimberlee, Hadi, Masood Z., Lane, Todd W., Lippmeier, J. Casey, Martinez, Diego, Parker, Micaela S., Pazour, Gregory J., Saito, Mak A., Rokhsar, Dan S., Armbrust, E. Virginia, Bowler, Chris

“…Diatoms are unicellular brown algae that likely arose from the endocytobiosis of a red alga into a single‐celled heterotroph and that constitute an algal class…”
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Amphimeric mitochondrial genomes of petite mutants of yeast. III. Generation by linking two secondary-structure-dependent illegitimate recombination events by Rayko, E, Goursot, R

“…The generation of amphimeric mitochondrial petite genomes of yeast can be explained by a process that links together two illegitimate recombination events,…”
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Amphimeric mitochondrial genomes of petite mutants of yeast. II. A model for the amplification of amphimeric mitochondrial petite DNA by Rayko, E, Goursot, R

“…A model for the recombination-directed replication and amplification of the mtDNA of amphimeric petite mutants of S. cerevisiae is proposed. Replication of an…”
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Amphimeric mitochondrial genomes of petite mutants of yeast. I. Flip-flop amphimers make up the mitochondrial genomes of "palindromic" petite mutants of yeast by Rayko, E, Goursot, R

“…The mitochondrial (mt) genomes of three spontaneous cytoplasmic "palindromic" petite mutants of yeast were studied by restriction-enzyme analysis. These mt…”
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Nuclear mutations affecting the stability of the mitochondrial genome inS. cerevisiae by Rayko, Edda, Goursot, Regina

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Lack of site-specific recombination between mitochondrial genomes of petite mutants of yeast by Rayko, E, Goursot, R, Bernardi, G

“…Previous work from our laboratory showed that mitochondrial (mt) genomes, with tandem repeat units, from spontaneous, cytoplasmic petite mutants of…”
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Regions flanking ori sequences affect the replication efficiency of the mitochondrial genome of ori+ petite mutants from yeast by Rayko, E, Goursot, R, Cherif-Zahar, B, Melis, R, Bernardi, G

“…The mitochondrial genomes of progenies from 26 crosses between 17 cytoplasmic, spontaneous, suppressive, ori+ petite mutants of Saccharomyces cerevisiae have…”
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Nuclear mutations affecting the stability of the mitochondrial genome in S. cerevisiae by RAYKO, E, GOURSOT, R

“…We have studied a pleiotropic mutation petD in S. cerevisiae which both confers the inability to grow on glycerol (Gly-) and greatly increases the frequency of…”
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