Search Results - "Ramakodi, Meganathan P."

Extensive set of African ancestry-informative markers (AIMs) to study ancestry and population health by Boudeau, Samantha, Ramakodi, Meganathan P, Zhou, Yan, Liu, Jeffrey C, Ragin, Camille, Kulathinal, Rob J

“…Human populations are often highly structured due to differences in genetic ancestry among groups, posing difficulties in associating genes with diseases…”
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Merging and concatenation of sequencing reads: a bioinformatics workflow for the comprehensive profiling of microbiome from amplicon data by Ramakodi, Meganathan P

“…Abstract A comprehensive profiling of microbial diversity is essential to understand the ecosystem functions. Universal primer sets such as the 515Y/926R could…”
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Don’t let valuable microbiome data go to waste: combined usage of merging and direct-joining of sequencing reads for low-quality paired-end amplicon data by Ramakodi, Meganathan P.

“…The pernicious nature of low-quality sequencing data warrants improvement in the bioinformatics workflow for profiling microbial diversity. The conventional…”
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Influence of 16S rRNA reference databases in amplicon-based environmental microbiome research by Ramakodi, Meganathan P.

“…Purpose The reference databases play a pivotal role in amplicon microbiome research, however these databases differ in the sequence content and taxonomic…”
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A comprehensive evaluation of single-end sequencing data analyses for environmental microbiome research by Ramakodi, Meganathan P.

“…Illumina sequencing platforms have been widely used for amplicon-based environmental microbiome research. Analyses of amplicon data of environmental samples,…”
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Effect of Amplicon Sequencing Depth in Environmental Microbiome Research by Ramakodi, Meganathan P.

“…Amplicon sequencing approach is commonly employed in microbiome studies and sequencing depth is considered as a major factor influencing the outcome of data…”
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Salivary Microbiome Diversity in Kuwaiti Adolescents with Varied Body Mass Index—A Pilot Study by Alqaderi, Hend, Ramakodi, Meganathan P., Nizam, Rasheeba, Jacob, Sindhu, Devarajan, Sriraman, Eaaswarkhanth, Muthukrishnan, Al-Mulla, Fahd

“…The potential role of the salivary microbiome in human diseases has increasingly been explored. The salivary microbiome has been characterized in several…”
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Analysis of 16S rRNA amplicon data illuminates the major role of environment in determining the marine plastisphere microbial communities by Ramakodi, Meganathan P., Palanivishwanath, Saravanan

“…Microplastics (MPs) are a potential threat to the marine environment and its associated ecosystem functions. Earlier investigations revealed that the…”
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Isolation, characterization and identification of antibiofouling metabolite from mangrove derived Streptomyces sampsonii PM33 by Gopikrishnan, Venugopal, Radhakrishnan, Manikkam, Shanmugasundaram, Thangavel, Ramakodi, Meganathan P., Balagurunathan, Ramasamy

“…In this study, we report the production, bioassay guided isolation and identification of antibiofouling metabolite from mangrove derived actinobacterium,…”
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Review of bioaerosols from different sources and their health impacts by G.S.J., Shailaja, Ramakodi, Meganathan P., T.V.B.P.S., Ramakrishna

“…The emission of bioaerosols in the ambient atmosphere from different sources is a cause of concern for human health and the environment. Bioaerosols are a…”
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Existence of rare actinobacterial forms in the Indian sector of Southern Ocean: 16 S rRNA based metabarcoding study by Manikkam, Radhakrishnan, Kaari, Manigundan, Baskaran, Abirami, Ramakodi, Meganathan P., Venugopal, Gopikrishnan, Bhaskar, Parli Venkateswaran

“…The significance of the Southern Ocean (SO) as a sink of atmospheric CO 2 and other greenhouse gases is well established. Earlier studies have highlighted the…”
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A 454 sequencing approach to dipteran mitochondrial genome research by Ramakodi, Meganathan P., Singh, Baneshwar, Wells, Jeffrey D., Guerrero, Felix, Ray, David A.

“…The availability of complete mitochondrial genome (mtgenome) data for Diptera, one of the largest metazoan orders, in public databases is limited. The advent…”
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Integrative genomic analysis identifies ancestry‐related expression quantitative trait loci on DNA polymerase β and supports the association of genetic ancestry with survival disparities in head and neck squamous cell carcinoma by Ramakodi, Meganathan P., Devarajan, Karthik, Blackman, Elizabeth, Gibbs, Denise, Luce, Danièle, Deloumeaux, Jacqueline, Duflo, Suzy, Liu, Jeffrey C., Mehra, Ranee, Kulathinal, Rob J., Ragin, Camille C.

“…BACKGROUND African Americans with head and neck squamous cell carcinoma (HNSCC) have a lower survival rate than whites. This study investigated the functional…”
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Ancestral-derived effects on the mutational landscape of laryngeal cancer by Ramakodi, Meganathan P., Kulathinal, Rob J., Chung, Yujin, Serebriiskii, Ilya, Liu, Jeffrey C., Ragin, Camille C.

“…Laryngeal cancer disproportionately affects more African-Americans than European-Americans. Here, we analyze the genome-wide somatic point mutations from the…”
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Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes by Suh, Alexander, Churakov, Gennady, Ramakodi, Meganathan P, Platt, 2nd, Roy N, Jurka, Jerzy, Kojima, Kenji K, Caballero, Juan, Smit, Arian F, Vliet, Kent A, Hoffmann, Federico G, Brosius, Jürgen, Green, Richard E, Braun, Edward L, Ray, David A, Schmitz, Jürgen

“…Chicken repeat 1 (CR1) retroposons are long interspersed elements (LINEs) that are ubiquitous within amniote genomes and constitute the most abundant family of…”
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Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes by Suh, Alexander, Churakov, Gennady, Ramakodi, Meganathan P., Platt, Roy N., Jurka, Jerzy, Kojima, Kenji K., Caballero, Juan, Smit, Arian F., Vliet, Kent A., Hoffmann, Federico G., Brosius, Jürgen, Green, Richard E., Braun, Edward L., Ray, David A., Schmitz, Jürgen

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Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs by Green, Richard E., Braun, Edward L., Armstrong, Joel, Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Vandewege, Michael W., St. John, John A., Capella-Gutiérrez, Salvador, Castoe, Todd A., Kern, Colin, Fujita, Matthew K., Opazo, Juan C., Jurka, Jerzy, Kojima, Kenji K., Caballero, Juan, Hubley, Robert M., Smit, Arian F., Platt, Roy N., Lavoie, Christine A., Ramakodi, Meganathan P., Finger, John W., Suh, Alexander, Isberg, Sally R., Miles, Lee, Chong, Amanda Y., Jaratlerdsiri, Weerachai, Gongora, Jaime, Moran, Christopher, Iriarte, Andrés, McCormack, John, Burgess, Shane C., Edwards, Scott V., Lyons, Eric, Williams, Christina, Breen, Matthew, Howard, Jason T., Gresham, Cathy R., Peterson, Daniel G., Schmitz, Jürgen, Pollock, David D., Haussler, David, Triplett, Eric W., Zhang, Guojie, Irie, Naoki, Jarvis, Erich D., Brochu, Christopher A., Schmidt, Carl J., McCarthy, Fiona M., Faircloth, Brant C., Hoffmann, Federico G., Glenn, Travis C., Gabaldón, Toni, Paten, Benedict, Ray, David A.

“…To provide context for the diversification of archosaurs--the group that includes crocodilians, dinosaurs, and birds--we generated draft genomes of three…”
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Production of protease enzyme from slaughterhouse effluent: An approach to generate value-added products from waste by Ramakodi, Meganathan P., Santhosh, Neelam, T., Pragadeesh, Mohan, S. Venkata, Basha, Shaik

“…India is one of the largest exporters of meat or meat products in the world. The production of meat or meat products yields enormous amount of wastes which…”
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Integrative genomics analysis identifies ancestral-related eQTLs on POLB, and supports the association of genetic ancestry with survival disparity in HNSCC by Ramakodi, Meganathan P., Devarajan, Karthik, Blackman, Elizabeth, Gibbs, Denise, Luce, Danièle, Deloumeaux, Jacqueline, Duflo, Suzy, Liu, Jeffrey C., Mehra, Ranee, Kulathinal, Rob J., Ragin, Camille C.

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