Search Results - "Rakus, John F."

Acetylation, ADP-ribosylation and methylation of malate dehydrogenase by Kuhn, Misty L, Rakus, John F, Quenet, Delphine

“…Metabolism within an organism is regulated by various processes, including post-translational modifications (PTMs). These types of chemical modifications alter…”
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miR-30b/30d Regulation of GalNAc Transferases Enhances Invasion and Immunosuppression during Metastasis by Gaziel-Sovran, Avital, Segura, Miguel F., Di Micco, Raffaella, Collins, Mary K., Hanniford, Douglas, Vega-Saenz de Miera, Eleazar, Rakus, John F., Dankert, John F., Shang, Shulian, Kerbel, Robert S., Bhardwaj, Nina, Shao, Yongzhao, Darvishian, Farbod, Zavadil, Jiri, Erlebacher, Adrian, Mahal, Lara K., Osman, Iman, Hernando, Eva

“…To metastasize, a tumor cell must acquire abilities such as the capacity to colonize new tissue and evade immune surveillance. Recent evidence suggests that…”
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New Technologies for Glycomic Analysis: Toward a Systematic Understanding of the Glycome by Rakus, John F, Mahal, Lara K

“…Carbohydrates are the most difficult class of biological molecules to study by high-throughput methods owing to the chemical similarities between the…”
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Length of course-based undergraduate research experiences (CURE) impacts student learning and attitudinal outcomes: A study of the Malate dehydrogenase CUREs Community (MCC) by DeChenne-Peters, Sue Ellen, Rakus, John F, Parente, Amy D, Mans, Tamara L, Eddy, Rebecca, Galport, Nicole, Koletar, Courtney, Provost, Joseph J, Bell, J Ellis, Bell, Jessica K

“…Course-based undergraduate research experiences (CUREs) are laboratory courses that integrate broadly relevant problems, discovery, use of the scientific…”
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Mapping posttranscriptional regulation of the human glycome uncovers microRNA defining the glycocode by Agrawal, Praveen, Kurcon, Tomasz, Pilobello, Kanoelani T., Rakusa, John F., Koppolu, Sujeethraj, Liu, Zhongyin, Batista, Bianca S., Enga, William S., Hsu, Ku-Lung, Liang, Yaxuan, Mahal, Lara K.

“…Cell surface glycans form a critical interface with the biological milieu, informing diverse processes from the inflammatory cascade to cellular migration…”
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Evolution of Enzymatic Activities in the Enolase Superfamily:  l-Fuconate Dehydratase from Xanthomonas campestris by Yew, Wen Shan, Fedorov, Alexander A., Fedorov, Elena V., Rakus, John F., Pierce, Richard W., Almo, Steven C., Gerlt, John A.

“…Many members of the mechanistically diverse enolase superfamily have unknown functions. In this report we use both genome (operon) context and screening of a…”
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Evolution of Enzymatic Activities in the Enolase Superfamily:  d-Mannonate Dehydratase from Novosphingobium aromaticivorans by Rakus, John F, Fedorov, Alexander A, Fedorov, Elena V, Glasner, Margaret E, Vick, Jacob E, Babbitt, Patricia C, Almo, Steven C, Gerlt, John A

“…The d-mannonate dehydratase (ManD) function was assigned to a group of orthologous proteins in the mechanistically diverse enolase superfamily by screening a…”
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CUREs in biochemistry—where we are and where we should go by Bell, Jessica K., Eckdahl, Todd T., Hecht, David A., Killion, Patrick J., Latzer, Joachim, Mans, Tamara L., Provost, Joseph J., Rakus, John F., Siebrasse, Erica A., Ellis Bell, J.

“…Integration of research experience into classroom is an important and vital experience for all undergraduates. These course‐based undergraduate research…”
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Evolution of Enzymatic Activities in the Enolase Superfamily: l-Rhamnonate Dehydratase by Rakus, John F, Fedorov, Alexander A, Fedorov, Elena V, Glasner, Margaret E, Hubbard, Brian K, Delli, Joseph D, Babbitt, Patricia C, Almo, Steven C, Gerlt, John A

“…The l-rhamnonate dehydratase (RhamD) function was assigned to a previously uncharacterized family in the mechanistically diverse enolase superfamily that is…”
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Crystal Structure and Functional Assignment of YfaU, a Metal Ion Dependent Class II Aldolase from Escherichia coli K12 by Rea, Dean, Hovington, Rebecca, Rakus, John F, Gerlt, John A, Fülöp, Vilmos, Bugg, Timothy D. H, Roper, David I

“…One of the major challenges in the postgenomic era is the functional assignment of proteins using sequence- and structure-based predictive methods coupled with…”
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Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis by Rakus, John F, Kalyanaraman, Chakrapani, Fedorov, Alexander A, Fedorov, Elena V, Mills-Groninger, Fiona P, Toro, Rafael, Bonanno, Jeffrey, Bain, Kevin, Sauder, J. Michael, Burley, Stephen K, Almo, Steven C, Jacobson, Matthew P, Gerlt, John A

“…The structure of an uncharacterized member of the enolase superfamily from Oceanobacillus iheyensis (GI 23100298, IMG locus tag Ob2843, PDB entry ) was…”
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Comparison of lipoprotein lipase glycosylation from adipocytes in lean and obese Zucker rats by Cook, Allison B., Frost, Leslie M., Rakus, John F.

“…C‐mannosylation is a type of protein glycosylation involving a covalently attached mannose sugar to the C2 carbon of an indole ring on tryptophan. Lipoprotein…”
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Length of course-based undergraduate research experiences by DeChenne-Peters, Sue Ellen, Rakus, John F, Parente, Amy D, Mans, Tamara L, Eddy, Rebecca, Galport, Nicole, Koletar, Courtney, Provost, Joseph J, Bell, J. Ellis, Bell, Jessica K

“…Course-based undergraduate research experiences (CUREs) are laboratory courses that integrate broadly relevant problems, discovery, use of the scientific…”
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Length of course-based undergraduate research experiences (CURE) impacts student learning and attitudinal outcomes: A study of the Malate dehydrogenase CUREs Community (MCC) by Sue Ellen DeChenne-Peters, John F. Rakus, Amy D. Parente, Tamara L. Mans, Rebecca Eddy, Nicole Galport, Courtney Koletar, Joseph J. Provost, J. Ellis Bell, Jessica K. Bell

“…Course-based undergraduate research experiences (CUREs) are laboratory courses that integrate broadly relevant problems, discovery, use of the scientific…”
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Evolution of Enzymatic Activities in the Enolase Superfamily:  d -Mannonate Dehydratase from Novosphingobium aromaticivoran s by Rakus, John F., Fedorov, Alexander A., Fedorov, Elena V., Glasner, Margaret E., Vick, Jacob E., Babbitt, Patricia C., Almo, Steven C., Gerlt, John A.

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