Search Results - "Rahman, Sohel"

MultiResUNet : Rethinking the U-Net architecture for multimodal biomedical image segmentation by Ibtehaz, Nabil, Rahman, M. Sohel

“…In recent years Deep Learning has brought about a breakthrough in Medical Image Segmentation. In this regard, U-Net has been the most popular architecture in…”
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CRISPR-DIPOFF: an interpretable deep learning approach for CRISPR Cas-9 off-target prediction by Toufikuzzaman, Md, Hassan Samee, Md Abul, Sohel Rahman, M

“…Abstract CRISPR Cas-9 is a groundbreaking genome-editing tool that harnesses bacterial defense systems to alter DNA sequences accurately. This innovative…”
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Accurate phylogenetic tree reconstruction from quartets: a heuristic approach by Reaz, Rezwana, Bayzid, Md Shamsuzzoha, Rahman, M Sohel

“…Supertree methods construct trees on a set of taxa (species) combining many smaller trees on the overlapping subsets of the entire set of taxa. A 'quartet' is…”
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Characterization of intrinsically disordered regions in proteins informed by human genetic diversity by Ahmed, Shehab S, Rifat, Zaara T, Lohia, Ruchi, Campbell, Arthur J, Dunker, A Keith, Rahman, M Sohel, Iqbal, Sumaiya

“…All proteomes contain both proteins and polypeptide segments that don't form a defined three-dimensional structure yet are biologically active-called…”
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CRISPRpred: A flexible and efficient tool for sgRNAs on-target activity prediction in CRISPR/Cas9 systems by Rahman, Md Khaledur, Rahman, M Sohel

“…The CRISPR/Cas9-sgRNA system has recently become a popular tool for genome editing and a very hot topic in the field of medical research. In this system, Cas9…”
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CRISPRpred(SEQ): a sequence-based method for sgRNA on target activity prediction using traditional machine learning by Muhammad Rafid, Ali Haisam, Toufikuzzaman, Md, Rahman, Mohammad Saifur, Rahman, M Sohel

“…The latest works on CRISPR genome editing tools mainly employs deep learning techniques. However, deep learning models lack explainability and they are harder…”
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Comprehensive characterization of amino acid positions in protein structures reveals molecular effect of missense variants by Iqbal, Sumaiya, Pérez-Palma, Eduardo, Jespersen, Jakob B., May, Patrick, Hoksza, David, Heyne, Henrike O., Ahmed, Shehab S., Rifat, Zaara T., Rahman, M. Sohel, Lage, Kasper, Palotie, Aarno, Cottrell, Jeffrey R., Wagner, Florence F., Daly, Mark J., Campbell, Arthur J., Lal, Dennis

“…Interpretation of the colossal number of genetic variants identified from sequencing applications is one of the major bottlenecks in clinical genetics, with…”
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A novel customer churn prediction model for the telecommunication industry using data transformation methods and feature selection by Sana, Joydeb Kumar, Abedin, Mohammad Zoynul, Rahman, M Sohel, Rahman, M Saifur

“…Customer churn is one of the most critical issues faced by the telecommunication industry (TCI). Researchers and analysts leverage customer relationship…”
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A Shallow U-Net Architecture for Reliably Predicting Blood Pressure (BP) from Photoplethysmogram (PPG) and Electrocardiogram (ECG) Signals by Mahmud, Sakib, Ibtehaz, Nabil, Khandakar, Amith, Tahir, Anas M, Rahman, Tawsifur, Islam, Khandaker Reajul, Hossain, Md Shafayet, Rahman, M Sohel, Musharavati, Farayi, Ayari, Mohamed Arselene, Islam, Mohammad Tariqul, Chowdhury, Muhammad E H

“…Cardiovascular diseases are the most common causes of death around the world. To detect and treat heart-related diseases, continuous blood pressure (BP)…”
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PPG2ABP: Translating Photoplethysmogram (PPG) Signals to Arterial Blood Pressure (ABP) Waveforms by Ibtehaz, Nabil, Mahmud, Sakib, Chowdhury, Muhammad E. H., Khandakar, Amith, Salman Khan, Muhammad, Ayari, Mohamed Arselene, Tahir, Anas M., Rahman, M. Sohel

“…Cardiovascular diseases are one of the most severe causes of mortality, annually taking a heavy toll on lives worldwide. Continuous monitoring of blood…”
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Forward Diffusion Guided Reconstruction as a Multi-Modal Multi-Task Learning Scheme by Sarker, Najibul Haque, Sohel Rahman, M.

“…Multi-Modal MRI images offer various perspectives for identifying regions of interest in the brain. Previous studies have successfully utilized Deep Learning…”
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SICaRiO: short indel call filtering with boosting by Bhuyan, Md Shariful Islam, Pe’er, Itsik, Rahman, M Sohel

“…Abstract Despite impressive improvement in the next-generation sequencing technology, reliable detection of indels is still a difficult endeavour. Recognition…”
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Succinylated lysine residue prediction revisited by Ahmed, Shehab Sarar, Rifat, Zaara Tasnim, Rahman, M Saifur, Rahman, M Sohel

“…Abstract Lysine succinylation is a kind of post-translational modification (PTM) that plays a crucial role in regulating the cellular processes. Aberrant…”
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RBSURFpred: Modeling protein accessible surface area in real and binary space using regularized and optimized regression by Tarafder, Sumit, Toukir Ahmed, Md, Iqbal, Sumaiya, Tamjidul Hoque, Md, Sohel Rahman, M.

“…•We have presented a new predictor, RBSURFpred, which extends a previous predictor, REGAd3p on several dimensions.•RBSURFpred uses regularized exact regression…”
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DeepBend: An interpretable model of DNA bendability by Khan, Samin Rahman, Sakib, Sadman, Rahman, M. Sohel, Samee, Md. Abul Hassan

“…The bendability of genomic DNA impacts chromatin packaging and protein-DNA binding. However, we do not have a comprehensive understanding of the motifs…”
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To trace or not to trace: Saving lives from COVID-19 at the cost of privacy breach in Bangladesh by Alam, Tanvir, Rahman, Suhayl

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Constrained sequence analysis algorithms in computational biology by Farhana, Effat, Rahman, M. Sohel

“…The knowledge of the similarity of two or more sequences is crucial in computational molecular biology. The longest common subsequence (LCS) is a well-known…”
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Multidimensional segment trees can do range updates in poly-logarithmic time by Ibtehaz, Nabil, Kaykobad, M., Sohel Rahman, M.

“…Updating and querying on a range is a classical algorithmic problem with a multitude of applications. The Segment Tree data structure is particularly notable…”
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COVID-19: A case report from Bangladesh perspective by Jahan, Yasmin, Rahman, Sohel, Rahman, Atiqur

“…A 34-year-old man without any significant medical history or comorbidities, suddenly developed fever, and shortness of breath, thereby admitted to the…”
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COVID-19Base v3: Update of the knowledgebase for drugs and biomedical entities linked to COVID-19 by Basit, Syed Abdullah, Qureshi, Rizwan, Musleh, Saleh, Guler, Reto, Rahman, M Sohel, Biswas, Kabir H, Alam, Tanvir

“…COVID-19 has taken a huge toll on our lives over the last 3 years. Global initiatives put forward by all stakeholders are still in place to combat this…”
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