Search Results - "Rafalski, J Antoni"

Can genomics boost productivity of orphan crops? by Varshney, Rajeev K, Ribaut, Jean-Marcel, Buckler, Edward S, Tuberosa, Roberto, Rafalski, J Antoni, Langridge, Peter

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Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize by Salvi, Silvio, Sponza, Giorgio, Morgante, Michele, Tomes, Dwight, Niu, Xiaomu, Fengler, Kevin A, Meeley, Robert, Ananiev, Evgueni V, Svitashev, Sergei, Bruggemann, Edward, Li, Bailin, Hainey, Christine F, Radovic, Slobodanka, Zaina, Giusi, Rafalski, J.-Antoni, Tingey, Scott V, Miao, Guo-Hua, Phillips, Ronald L, Tuberosa, Roberto

“…Flowering time is a fundamental trait of maize adaptation to different agricultural environments. Although a large body of information is available on the map…”
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Genome-wide expression quantitative trait loci (eQTL) analysis in maize by Holloway, Beth, Luck, Stanley, Beatty, Mary, Rafalski, J-Antoni, Li, Bailin

“…Expression QTL analyses have shed light on transcriptional regulation in numerous species of plants, animals, and yeasts. These microarray-based analyses…”
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Association genetics in crop improvement by Rafalski, J Antoni

“…Increased availability of high throughput genotyping technology together with advances in DNA sequencing and in the development of statistical methodology…”
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A Genome-Wide Association Study for Culm Cellulose Content in Barley Reveals Candidate Genes Co-Expressed with Members of the CELLULOSE SYNTHASE A Gene Family by Houston, Kelly, Burton, Rachel A, Sznajder, Beata, Rafalski, Antoni J, Dhugga, Kanwarpal S, Mather, Diane E, Taylor, Jillian, Steffenson, Brian J, Waugh, Robbie, Fincher, Geoffrey B

“…Cellulose is a fundamentally important component of cell walls of higher plants. It provides a scaffold that allows the development and growth of the plant to…”
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Customized Gene Expression Microarray Reveals That the Brittle Stem Phenotype fs2 of Barley Is Attributable to a Retroelement in the HvCesA4 Cellulose Synthase Gene by Burton, Rachel A, Ma, Gang, Baumann, Ute, Harvey, Andrew J, Shirley, Neil J, Taylor, Jillian, Pettolino, Filomena, Bacic, Antony, Beatty, Mary, Simmons, Carl R, Dhugga, Kanwarpal S, Rafalski, J. Antoni, Tingey, Scott V, Fincher, Geoffrey B

“…The barley (Hordeum vulgare) brittle stem mutants, fs2, designated X054 and M245, have reduced levels of crystalline cellulose compared with their parental…”
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Cell Wall Modifications in Maize Pulvini in Response to Gravitational Stress by Zhang, Qisen, Pettolino, Filomena A., Dhugga, Kanwarpal S., Rafalski, J. Antoni, Tingey, Scott, Taylor, Jillian, Shirley, Neil J., Hayes, Kevin, Beatty, Mary, Abrams, Suzanne R., Zaharia, L. Irina, Burton, Rachel A., Bacic, Antony, Fincher, Geoffrey B.

“…Changes in cell wall polysaccharides, transcript abundance, metabolite profiles, and hormone concentrations were monitored in the upper and lower regions of…”
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DNA array profiling of gene expression changes during maize embryo development by Lee, Jian-Ming, Williams, Mark E, Tingey, Scott V, Rafalski, Antoni J

“…We are using DNA microarray-based gene expression profiling to classify temporal patterns of gene expression during the development of maize embryos, to…”
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role of regulatory genes during maize domestication: evidence from nucleotide polymorphism and gene expression by Zhao, Q, Thuillet, A.C, Uhlmann, N.K, Weber, A, Rafalski, J.A, Allen, S.M, Tingey, S, Doebley, J

“…We investigated DNA sequence variation in 72 candidate genes in maize landraces and the wild ancestor of maize, teosinte. The candidate genes were chosen…”
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Variation for N Uptake System in Maize: Genotypic Response to N Supply by Garnett, Trevor, Plett, Darren, Conn, Vanessa, Conn, Simon, Rabie, Huwaida, Rafalski, J Antoni, Dhugga, Kanwarpal, Tester, Mark A, Kaiser, Brent N

“…An understanding of the adaptations made by plants in their nitrogen (N) uptake systems in response to reduced N supply is important to the development of…”
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Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes by Zhang, Qisen, Cheetamun, Roshan, Dhugga, Kanwarpal S, Rafalski, J Antoni, Tingey, Scott V, Shirley, Neil J, Taylor, Jillian, Hayes, Kevin, Beatty, Mary, Bacic, Antony, Burton, Rachel A, Fincher, Geoffrey B

“…The elongating maize internode represents a useful system for following development of cell walls in vegetative cells in the Poaceae family. Elongating…”
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Combining Expression and Comparative Evolutionary Analysis. The COBRA Gene Family by Brady, Siobhan M, Song, Shuang, Dhugga, Kanwarpal S, Rafalski, J. Antoni, Benfey, Philip N

“…Plant cell shape is achieved through a combination of oriented cell division and cell expansion and is defined by the cell wall. One of the genes identified to…”
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Endo-(1,4)-β-glucanase gene families in the grasses: temporal and spatial co-transcription of orthologous genes by Buchanan, Margaret, Burton, Rachel A, Dhugga, Kanwarpal S, Rafalski, Antoni J, Tingey, Scott V, Shirley, Neil J, Fincher, Geoffrey B

“…Endo-(1,4)-β-glucanase (cellulase) glycosyl hydrolase GH9 enzymes have been implicated in several aspects of cell wall metabolism in higher plants, including…”
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SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines by Ching, Ada, Caldwell, Katherine S, Jung, Mark, Dolan, Maurine, Smith, Oscar S, Tingey, Scott, Morgante, Michele, Rafalski, Antoni J

“…Recent studies of ancestral maize populations indicate that linkage disequilibrium tends to dissipate rapidly, sometimes within 100 bp. We set out to examine…”
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High-Density Microarray-Mediated Gene Expression Profiling of Escherichia coli by Wei, Y, Lee, J M, Richmond, C, Blattner, F R, Rafalski, J A, LaRossa, R A

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Cell Wall Modifications in Maize Pulvini in Response to Gravitational Stress1[W][OA] by Zhang, Qisen, Pettolino, Filomena A, Dhugga, Kanwarpal S, Rafalski, J Antoni, Tingey, Scott, Taylor, Jillian, Shirley, Neil J, Hayes, Kevin, Beatty, Mary, Abrams, Suzanne R, Zaharia, L Irina, Burton, Rachel A, Bacic, Antony, Fincher, Geoffrey B

“…Changes in cell wall polysaccharides, transcript abundance, metabolite profiles, and hormone concentrations were monitored in the upper and lower regions of…”
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Endo-(1,4)-β-Glucanase gene families in the grasses: temporal and spatial Co-transcription of orthologous genes1 by Buchanan, Margaret, Burton, Rachel A, Dhugga, Kanwarpal S, Rafalski, Antoni J, Tingey, Scott V, Shirley, Neil J, Fincher, Geoffrey B

“…BACKGROUND: Endo-(1,4)-β-glucanase (cellulase) glycosyl hydrolase GH9 enzymes have been implicated in several aspects of cell wall metabolism in higher plants,…”
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Genetic analysis using random amplified polymorphic DNA markers by Williams, J G, Hanafey, M K, Rafalski, J A, Tingey, S V

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A Customized Gene Expression Microarray Reveals That the Brittle Stem Phenotype fs2 of Barley Is Attributable to a Retroelement in the HvCesA4 Cellulose Synthase Gene1[W][OA] by Burton, Rachel A, Ma, Gang, Baumann, Ute, Harvey, Andrew J, Shirley, Neil J, Taylor, Jillian, Pettolino, Filomena, Bacic, Antony, Beatty, Mary, Simmons, Carl R, Dhugga, Kanwarpal S, Rafalski, J Antoni, Tingey, Scott V, Fincher, Geoffrey B

“…The barley (Hordeum vulgare) brittle stem mutants, fs2, designated X054 and M245, have reduced levels of crystalline cellulose compared with their parental…”
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A Genomic Approach to Gene Fusion Technology by Van Dyk, Tina K., Wei, Yan, Hanafey, Michael K., Dolan, Maureen, Mary Jane G. Reeve, Rafalski, J. Antoni, Rothman-Denes, Lucia B., LaRossa, Robert A.

“…Gene expression profiling provides powerful analyses of transcriptional responses to cellular perturbation. In contrast to DNA array-based methods, reporter…”
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