Search Results - "Rafael Silva-Rocha"

The private life of environmental bacteria: pollutant biodegradation at the single cell level by Nikel, Pablo Iván, Silva-Rocha, Rafael, Benedetti, Ilaria, de Lorenzo, Víctor

“…Summary Bacteria display considerable cell‐to‐cell heterogeneity in a number of genetic and physiological traits. Stochastic differences in regulatory patterns…”
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The art of vector engineering: towards the construction of next‐generation genetic tools by Nora, Luísa Czamanski, Westmann, Cauã Antunes, Martins‐Santana, Leonardo, Alves, Luana de Fátima, Monteiro, Lummy Maria Oliveira, Guazzaroni, María‐Eugenia, Silva‐Rocha, Rafael

“…Summary When recombinant DNA technology was developed more than 40 years ago, no one could have imagined the impact it would have on both society and the…”
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Chromatin profiling reveals heterogeneity in clinical isolates of the human pathogen Aspergillus fumigatus by Colabardini, Ana Cristina, Wang, Fang, Miao, Zhengqiang, Pardeshi, Lakhansing, Valero, Clara, de Castro, Patrícia Alves, Akiyama, Daniel Yuri, Tan, Kaeling, Nora, Luisa Czamanski, Silva-Rocha, Rafael, Marcet-Houben, Marina, Gabaldón, Toni, Fill, Taicia, Wong, Koon Ho, Goldman, Gustavo H

“…Invasive Pulmonary Aspergillosis, which is caused by the filamentous fungus Aspergillus fumigatus, is a life-threatening infection for immunosuppressed…”
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Transcriptional regulation of central carbon metabolism in Pseudomonas aeruginosa by Dolan, Stephen K., Pereira, Greicy, Silva‐Rocha, Rafael, Welch, Martin

“…Summary Microbes such as Pseudomonas aeruginosa are often challenged by rapidly changing nutritional environments. In order to adapt to these shifts in…”
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Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene by Silva-Rocha, Rafael, de Lorenzo, Víctor

“…Summary The expression dynamics of the catabolic promoters of the TOL plasmid pWW0 has been examined in single cells of Pseudomonas putida mt‐2 exposed to…”
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Pre‐mRNA splicing is modulated by antifungal drugs in the filamentous fungus Neurospora crassa by Mendes, Niege S., Silva, Patricia M., Silva‐Rocha, Rafael, Martinez‐Rossi, Nilce M., Rossi, Antonio

“…For this study, we sought to identify pre‐mRNA processing events modulated by changes in extracellular pH, inorganic phosphate, and antifungal drugs. We…”
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Recent Progress on Systems and Synthetic Biology Approaches to Engineer Fungi As Microbial Cell Factories by Amores, Gerardo Ruiz, Guazzaroni, María-Eugenia, Arruda, Letícia Magalhães, Silva-Rocha, Rafael

“…Filamentous fungi are remarkable organisms naturally specialized in deconstructing plant biomass and this feature has a tremendous potential for biofuel…”
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The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes by Silva-Rocha, Rafael, Martínez-García, Esteban, Calles, Belén, Chavarría, Max, Arce-Rodríguez, Alejandro, de Las Heras, Aitor, Páez-Espino, A David, Durante-Rodríguez, Gonzalo, Kim, Juhyun, Nikel, Pablo I, Platero, Raúl, de Lorenzo, Víctor

“…The 'Standard European Vector Architecture' database (SEVA-DB, http://seva.cnb.csic.es) was conceived as a user-friendly, web-based resource and a material…”
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ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization by Tamasco, Gustavo, Kumar, Manish, Zengler, Karsten, Silva-Rocha, Rafael, da Silva, Ricardo Roberto

“…Genome-scale metabolic reconstruction tools have been developed in the last decades. They have helped to reconstruct eukaryotic and prokaryotic metabolic…”
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Systems-Wide Dissection of Organic Acid Assimilation in Pseudomonas aeruginosa Reveals a Novel Path To Underground Metabolism by Dolan, Stephen K, Wijaya, Andre, Kohlstedt, Michael, Gläser, Lars, Brear, Paul, Silva-Rocha, Rafael, Wittmann, Christoph, Welch, Martin

“…The human pathogen Pseudomonas aeruginosa (Pa) is one of the most frequent and severe causes of nosocomial infection. This organism is also a major cause of…”
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Galectin-3 impacts Cryptococcus neoformans infection through direct antifungal effects by Almeida, Fausto, Wolf, Julie M., da Silva, Thiago Aparecido, DeLeon-Rodriguez, Carlos M., Rezende, Caroline Patini, Pessoni, André Moreira, Fernandes, Fabrício Freitas, Silva-Rocha, Rafael, Martinez, Roberto, Rodrigues, Marcio L., Roque-Barreira, Maria Cristina, Casadevall, Arturo

“…Cryptococcus neoformans is an encapsulated fungal pathogen that causes cryptococcosis, which is a major opportunistic infection in immunosuppressed…”
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Citrus rootstocks influence the population densities of pest mites by Silva, Rafael Rocha da, Teodoro, Adenir Vieira, Vasconcelos, Jéssica Fontes, Martins, Carlos Roberto, Soares Filho, Walter dos Santos, Carvalho, Hélio Wilson Lemos de, Guzzo, Elio Cesar

“…Citrus are attacked by pest mites such as the citrus rust mite Phyllocoptruta oleivora (Ashmead) (Acari: Eriophyidae) and the spider mite Tetranychus mexicanus…”
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Identification and functional analysis of novel protein-encoding sequences related to stress-resistance by Huanca-Juarez, Joshelin, Nascimento-Silva, Edson Alexandre, Silva, Ninna Hirata, Silva-Rocha, Rafael, Guazzaroni, María-Eugenia

“…Currently, industrial bioproducts are less competitive than chemically produced goods due to the shortcomings of conventional microbial hosts. Thus, is…”
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A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides by Nora, Luísa Czamanski, Wehrs, Maren, Kim, Joonhoon, Cheng, Jan-Fang, Tarver, Angela, Simmons, Blake A, Magnuson, Jon, Harmon-Smith, Miranda, Silva-Rocha, Rafael, Gladden, John M, Mukhopadhyay, Aindrila, Skerker, Jeffrey M, Kirby, James

“…Rhodosporidium toruloides is a promising host for the production of bioproducts from lignocellulosic biomass. A key prerequisite for efficient pathway…”
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Seasonal variation of pest mite populations in relation to citrus scion cultivars in northeastern Brazil by Da Silva, Rafael Rocha, Teodoro, Adenir Vieira, Martins, Carlos Roberto, Lemos de Carvalho, Hélio Wilson, Santos Silva, Shênia, Pimentel Farias, Adriano, Guzzo, Elio Cesar

“…Pest populations in a given agroecosystem may be influenced by several abiotic and biotic variables, including the host plant cultivar. We compared the…”
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Aspergillus fumigatus protein phosphatase PpzA is involved in iron assimilation, secondary metabolite production, and virulence by Manfiolli, Adriana Oliveira, Castro, Patrícia Alves, Reis, Thaila Fernanda, Dolan, Stephen, Doyle, Sean, Jones, Gary, Riaño Pachón, Diego M., Ulaş, Mevlüt, Noble, Luke M., Mattern, Derek J., Brakhage, Axel A., Valiante, Vito, Silva‐Rocha, Rafael, Bayram, Ozgur, Goldman, Gustavo H.

“…Summary Metal restriction imposed by mammalian hosts during an infection is a common mechanism of defence to reduce or avoid the pathogen infection. Metals are…”
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Benchmarking Bacterial Promoter Prediction Tools: Potentialities and Limitations by Cassiano, Murilo Henrique Anzolini, Silva-Rocha, Rafael

“…The promoter region is a key element required for the production of RNA in bacteria. While new high-throughput technology allows massively parallel mapping of…”
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The Duality of the MAPK Signaling Pathway in the Control of Metabolic Processes and Cellulase Production in Trichoderma reesei by de Paula, Renato Graciano, Antoniêto, Amanda Cristina Campos, Carraro, Cláudia Batista, Lopes, Douglas Christian Borges, Persinoti, Gabriela Felix, Peres, Nalu Teixeira Aguiar, Martinez-Rossi, Nilce Maria, Silva-Rocha, Rafael, Silva, Roberto Nascimento

“…In this study, through global transcriptional analysis by RNA-Sequencing, we identified the main changes in gene expression that occurred in two functional…”
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Mining novel cis -regulatory elements from the emergent host Rhodosporidium toruloides using transcriptomic data by Nora, Luísa Czamanski, Cassiano, Murilo Henrique Anzolini, Santana, Ítalo Paulino, Guazzaroni, María-Eugenia, Silva-Rocha, Rafael, da Silva, Ricardo Roberto

“…The demand for robust microbial cell factories that produce valuable biomaterials while resisting stresses imposed by current bioprocesses is rapidly growing…”
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Aspergillus fumigatus High Osmolarity Glycerol Mitogen Activated Protein Kinases SakA and MpkC Physically Interact During Osmotic and Cell Wall Stresses by Manfiolli, Adriana Oliveira, Mattos, Eliciane Cevolani, de Assis, Leandro José, Silva, Lilian Pereira, Ulaş, Mevlüt, Brown, Neil Andrew, Silva-Rocha, Rafael, Bayram, Özgür, Goldman, Gustavo H

“…, a saprophytic filamentous fungus, is a serious opportunistic pathogen of mammals and it is the primary causal agent of invasive aspergillosis (IA). Mitogen…”
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