Search Results - "RIVERS, R"

Systematic review of the evidence for an association between sugar‐sweetened beverage consumption and risk of obesity by Trumbo, Paula R, Rivers, Crystal R

“…A systematic review of the evidence for an association between sugar‐sweetened beverages and risk of obesity was conducted. This review focused specifically on…”
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ITSxpress: Software to rapidly trim internally transcribed spacer sequences with quality scores for marker gene analysis [version 1; peer review: 2 approved] by Rivers, Adam R, Weber, Kyle C, Gardner, Terrence G, Liu, Shuang, Armstrong, Shalamar D

“…The internally transcribed spacer (ITS) region between the small subunit ribosomal RNA gene and large subunit ribosomal RNA gene is a widely used phylogenetic…”
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Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon by Vaughn, Justin N., Branham, Sandra E., Abernathy, Brian, Hulse-Kemp, Amanda M., Rivers, Adam R., Levi, Amnon, Wechter, William P.

“…The genomic sequences segregating in experimental populations are often highly divergent from the community reference and from one another. Such divergence is…”
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Fatalities Involving Carfentanil and Furanyl Fentanyl: Two Case Reports by Swanson, Dina M., Hair, Laura S., Strauch Rivers, Selly R., Smyth, Brianna C., Brogan, Sara C., Ventoso, Alexis D., Vaccaro, Samantha L., Pearson, Julia M.

“…Abstract Carfentanil is a fentanyl analog frequently used in large animal veterinary medicine. Recently, carfentanil has been discovered in postmortem and…”
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Genomic Signatures for Sedimentary Microbial Utilization of Phytoplankton Detritus in a Fast-Flowing Estuary by Smith, Maria W., Herfort, Lydie, Rivers, Adam R., Simon, Holly M.

“…In fast-flowing, river-dominated estuaries, “hotspots” of microbial biogeochemical cycling can be found within areas of extended water retention. Lateral bays…”
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Dual PT-symmetric quantum field theories by Bender, Carl M., Jones, H.F., Rivers, R.J.

“…Some quantum field theories described by non-Hermitian Hamiltonians are investigated. It is shown that for the case of a free fermion field theory with a γ5…”
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea by Bowers, Robert M, Kyrpides, Nikos C, Stepanauskas, Ramunas, Harmon-Smith, Miranda, Doud, Devin, Reddy, T B K, Schulz, Frederik, Jarett, Jessica, Rivers, Adam R, Eloe-Fadrosh, Emiley A, Tringe, Susannah G, Ivanova, Natalia N, Copeland, Alex, Clum, Alicia, Becraft, Eric D, Malmstrom, Rex R, Birren, Bruce, Podar, Mircea, Bork, Peer, Weinstock, George M, Garrity, George M, Dodsworth, Jeremy A, Yooseph, Shibu, Sutton, Granger, Glöckner, Frank O, Gilbert, Jack A, Nelson, William C, Hallam, Steven J, Jungbluth, Sean P, Ettema, Thijs J G, Tighe, Scott, Konstantinidis, Konstantinos T, Liu, Wen-Tso, Baker, Brett J, Rattei, Thomas, Eisen, Jonathan A, Hedlund, Brian, McMahon, Katherine D, Fierer, Noah, Knight, Rob, Finn, Rob, Cochrane, Guy, Karsch-Mizrachi, Ilene, Tyson, Gene W, Rinke, Christian, Lapidus, Alla, Meyer, Folker, Yilmaz, Pelin, Parks, Donovan H, Murat Eren, A, Schriml, Lynn, Banfield, Jillian F, Hugenholtz, Philip, Woyke, Tanja

“…Standards for sequencing the microbial 'uncultivated majority', namely bacterial and archaeal single-cell genome sequences, and genome sequences from…”
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Zurek-Kibble domain structures: the dynamics of spontaneous vortex formation in annular Josephson tunnel junctions by Monaco, R, Mygind, J, Rivers, R J

“…Phase transitions create a domain structure with defects, which has been argued by Zurek and Kibble (ZK) to depend in a characteristic way on the quench rate…”
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MicroMPN: methods and software for high-throughput screening of microbe suppression in mixed populations by Franco Meléndez, Karla, Schuster, Layla, Donahey, Melinda Chue, Kairalla, Emily, Jansen, M Andrew, Reisch, Christopher, Rivers, Adam R

“…Screening assays are used to test if one or more microbes suppress a pathogen of interest. In the presence of more than one microbe, the screening method must…”
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Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata by Kemp, Dustin W, Rivers, Adam R, Kemp, Keri M, Lipp, Erin K, Porter, James W, Wares, John P

“…Coral surface mucus layer (SML) microbiota are critical components of the coral holobiont and play important roles in nutrient cycling and defense against…”
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Gaussianity revisited: exploring the Kibble-Zurek mechanism with superconducting rings by Weir, D J, Monaco, R, Koshelets, V P, Mygind, J, Rivers, R J

“…In this paper we use spontaneous flux production in annular superconductors to shed light on the Kibble-Zurek (KZ) scenario. In particular, we examine the…”
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Advancing Equity and Inclusion in Microbiome Research and Training by Foxx, Alicia J, Franco Meléndez, Karla P, Hariharan, Janani, Kozik, Ariangela J, Wattenburger, Cassandra J, Godoy-Vitorino, Filipa, Rivers, Adam R

“…This article proposes ways to improve inclusion and training in microbiome science and advocates for resource expansion to improve scientific capacity across…”
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Genetic Predictors of Benign Course of Ulcerative Colitis-A North American Inflammatory Bowel Disease Genetics Consortium Study by Kopylov, Uri, Boucher, Gabrielle, Waterman, Matti, Rivers, Claudia R, Patel, Mohini, Cho, Judy H, Colombel, Jean F, Duerr, Richard H, Binion, David, McGovern, Dermot P B, Schumm, Phillip P, Brant, Steven R, Silverberg, Mark S, Rioux, John D, Bitton, Alain

“…A subset of patients with ulcerative colitis (UC) have a benign course and an overall favorable prognosis. Early identification of these low-risk patients may…”
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IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses by Paez-Espino, David, Chen, I-Min A, Palaniappan, Krishna, Ratner, Anna, Chu, Ken, Szeto, Ernest, Pillay, Manoj, Huang, Jinghua, Markowitz, Victor M, Nielsen, Torben, Huntemann, Marcel, K Reddy, T B, Pavlopoulos, Georgios A, Sullivan, Matthew B, Campbell, Barbara J, Chen, Feng, McMahon, Katherine, Hallam, Steve J, Denef, Vincent, Cavicchioli, Ricardo, Caffrey, Sean M, Streit, Wolfgang R, Webster, John, Handley, Kim M, Salekdeh, Ghasem H, Tsesmetzis, Nicolas, Setubal, Joao C, Pope, Phillip B, Liu, Wen-Tso, Rivers, Adam R, Ivanova, Natalia N, Kyrpides, Nikos C

“…Viruses represent the most abundant life forms on the planet. Recent experimental and computational improvements have led to a dramatic increase in the number…”
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IgE and IgG4 epitopes of the peanut allergens shift following oral immunotherapy by Rambo, Ian M, Kronfel, Christina M, Rivers, Adam R, Swientoniewski, Lauren T, McBride, Jane K, Cheng, Hsiaopo, Simon, Reyna J, Ryan, Robert, Tilles, Stephen A, Nesbit, Jacqueline B, Kulis, Michael D, Hurlburt, Barry K, Maleki, Soheila J

“…Oral immunotherapy (OIT) with peanut ( ) allergen powder-dnfp (PTAH; Aimmune Therapeutics) is an FDA-approved treatment to desensitize peanut allergic…”
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Inability to Catabolize Rhamnose by Sinorhizobium meliloti Rm1021 Affects Competition for Nodule Occupancy by Rivers, Damien M R, Kim, Derek D, Oresnik, Ivan J

“…strains unable to grow on rhamnose as a sole carbon source are less competitive for nodule occupancy. To determine if the ability to use rhamnose as a sole…”
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Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3 by Rivers, Adam R, Burns, Andrew S, Chan, Leong-Keat, Moran, Mary Ann

“…In oligotrophic ocean waters where bacteria are often subjected to chronic nutrient limitation, community transcriptome sequencing has pointed to the presence…”
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Estimating farm to catchment nutrient fluxes using dynamic simulation modelling – Can agri-environmental BMPs really do the job? by Rivers, M.R., Weaver, D.M., Smettem, K.R.J., Davies, P.M.

“…A dynamic model of Phosphorus (P) movement through the Peel-Harvey catchment in South Western Australia was developed using system dynamics modelling software…”
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AT Homopolymer Strings in Salmonella enterica Subspecies I Contribute to Speciation and Serovar Diversity by Guard, Jean, Rivers, Adam R., Vaughn, Justin N., Rothrock, Jr, Michael J., Oladeinde, Adelumola, Shah, Devendra H.

“…Adenine and thymine homopolymer strings of at least 8 nucleotides (AT 8+mers) were characterized in Salmonella enterica subspecies I. The motif differed…”
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Adult meerkats modify close call rate in the presence of pups by Wyman, Megan T., Rivers, Pearl R., Muller, Coline, Toni, Pauline, Manser, Marta B.

“…In animals, signaling behavior is often context-dependent, with variation in the probability of emitting certain signals dependent on fitness advantages…”
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