Search Results - "REVA, Oleg"

Whole Genome-Based Characterization of Listeria monocytogenes Isolates Recovered From the Food Chain in South Africa by Mafuna, Thendo, Matle, Itumeleng, Magwedere, Kudakwashe, Pierneef, Rian E., Reva, Oleg N.

“…Listeria monocytogenes is an important foodborne pathogen which has the ability to adapt and survive in food and food processing facilities where it can…”
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Resistance Sniffer: An online tool for prediction of drug resistance patterns of Mycobacterium tuberculosis isolates using next generation sequencing data by Muzondiwa, Dillon, Mutshembele, Awelani, Pierneef, Rian E., Reva, Oleg N.

“…•Multidrug resistant tuberculosis (MDR-TB) threatens humankind.•Effective monitoring of MDR-TB in clinics is facilitated by NGS technologies.•Antibiotic…”
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Assembling metagenomes, one community at a time by van der Walt, Andries Johannes, van Goethem, Marc Warwick, Ramond, Jean-Baptiste, Makhalanyane, Thulani Peter, Reva, Oleg, Cowan, Don Arthur

“…Metagenomics allows unprecedented access to uncultured environmental microorganisms. The analysis of metagenomic sequences facilitates gene prediction and…”
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Universal Lineage-Independent Markers of Multidrug Resistance in Mycobacterium tuberculosis by Hlanze, Hleliwe, Mutshembele, Awelani, Reva, Oleg N

“…(1) Background: This study was aimed to identify universal genetic markers of multidrug resistance (MDR) in (Mtb) and establish statistical associations among…”
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Mupirocin Promotes Wound Healing by Stimulating Growth Factor Production and Proliferation of Human Keratinocytes by Twilley, Danielle, Reva, Oleg, Meyer, Debra, Lall, Namrita

“…Mupirocin has been reported for its role in the treatment of infected wounds through its antibacterial activity, however the role of mupirocin in promoting…”
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Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen by Ferrer, Manuel, Ghazi, Azam, Beloqui, Ana, Vieites, José María, López-Cortés, Nieves, Marín-Navarro, Julia, Nechitaylo, Taras Y, Guazzaroni, María-Eugenia, Polaina, Julio, Waliczek, Agnes, Chernikova, Tatyana N, Reva, Oleg N, Golyshina, Olga V, Golyshin, Peter N

“…Microbial communities from cow rumen are known for their ability to degrade diverse plant polymers at high rates. In this work, we identified 15 hydrolases…”
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Interplay of intracellular and trans‐cellular DNA methylation in natural archaeal consortia by Reva, Oleg N., La Cono, Violetta, Crisafi, Francesca, Smedile, Francesco, Mudaliyar, Manasi, Ghosal, Debnath, Giuliano, Laura, Krupovic, Mart, Yakimov, Michail M.

“…DNA methylation serves a variety of functions across all life domains. In this study, we investigated archaeal methylomics within a tripartite xylanolytic…”
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Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools by Rotimi, Adeola M, Pierneef, Rian, Reva, Oleg N

“…Metagenomic approaches have revealed the complexity of environmental microbiomes with the advancement in whole genome sequencing displaying a significant level…”
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The Epistatic Landscape of Antibiotic Resistance of Different Clades of Mycobacterium tuberculosis by Muzondiwa, Dillon, Hlanze, Hleliwe, Reva, Oleg N

“…Drug resistance (DR) remains a global challenge in tuberculosis (TB) control. In order to develop molecular-based diagnostic methods to replace the traditional…”
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Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42 by Jungblut, Peter R, Voigt, Birgit, Junge, Helmut, Scholz, Romy, Süssmuth, Roderich, Morgenstern, Burkhard, Strittmatter, Axel, Chen, Xiao Hua, Hess, Wolfgang R, Heinemeyer, Isabelle, Liesegang, Heiko, Schneider, Kathrin, Borriss, Rainer, Gottschalk, Gerhard, Koumoutsi, Alexandra, Eisenreich, Andreas, Voss, Björn, Reva, Oleg, Vater, Joachim

“…Bacillus amyloliquefaciens FZB42 is a Gram-positive, plant-associated bacterium, which stimulates plant growth and produces secondary metabolites that suppress…”
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Genetic, Epigenetic and Phenotypic Diversity of Four Bacillus velezensis Strains Used for Plant Protection or as Probiotics by Reva, Oleg N, Swanevelder, Dirk Z H, Mwita, Liberata A, Mwakilili, Aneth David, Muzondiwa, Dillon, Joubert, Monique, Chan, Wai Yin, Lutz, Stefanie, Ahrens, Christian H, Avdeeva, Lylia V, Kharkhota, Maksim A, Tibuhwa, Donatha, Lyantagaye, Sylvester, Vater, Joachim, Borriss, Rainer, Meijer, Johan

“…strains are applied as ecologically safe biopesticides, plant growth promoting rhizobacteria (PGPR), and in veterinary probiotics. They are abundant in various…”
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Virulence and antimicrobial resistance genes are enriched in the plasmidome of clinical Escherichia coli isolates compared with wastewater isolates from western Kenya by Wawire, Sifuna Anthony, Reva, Oleg N., O'Brien, Thomas J., Figueroa, Wendy, Dinda, Victor, Shivoga, William A., Welch, Martin

“…Many low-middle income countries in Africa have poorly-developed infectious disease monitoring systems. Here, we employed whole genome sequencing (WGS) to…”
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EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer detection in eukaryotes by Clasen, Frederick Johannes, Pierneef, Rian Ewald, Slippers, Bernard, Reva, Oleg

“…Genomic islands (GIs) are inserts of foreign DNA that have potentially arisen through horizontal gene transfer (HGT). There are evidences that GIs can…”
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Mainstreams of horizontal gene exchange in enterobacteria: consideration of the outbreak of enterohemorrhagic E. coli O104:H4 in Germany in 2011 by Bezuidt, Oliver, Pierneef, Rian, Mncube, Kingdom, Lima-Mendez, Gipsi, Reva, Oleg N

“…Escherichia coli O104:H4 caused a severe outbreak in Europe in 2011. The strain TY-2482 sequenced from this outbreak allowed the discovery of its closest…”
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Think big - giant genes in bacteria by Reva, Oleg, Tümmler, Burkhard

“…Long genes should be rare in archaea and eubacteria because of the demanding costs of time and resources for protein production. The search in 580 sequenced…”
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Complete genome sequence and epigenetic profile of Bacillus velezensis UCMB5140 used for plant and crop protection in comparison with other plant-associated Bacillus strains by Reva, Oleg N., Larisa, Safronova A., Mwakilili, Aneth D., Tibuhwa, Donatha, Lyantagaye, Sylvester, Chan, Wai Yin, Lutz, Stefanie, Ahrens, Christian H., Vater, Joachim, Borriss, Rainer

“…The application of biocontrol biopesticides based on plant growth–promoting rhizobacteria (PGPR), particularly members of the genus Bacillus, is considered a…”
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Analysis of genomic rearrangements, horizontal gene transfer and role of plasmids in the evolution of industrial important Thermus species by Kumwenda, Benjamin, Litthauer, Derek, Reva, Oleg

“…Bacteria of genus Thermus inhabit both man-made and natural thermal environments. Several Thermus species have shown biotechnological potential such as…”
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The Effect of Iodine-Containing Nano-Micelles, FS-1, on Antibiotic Resistance, Gene Expression and Epigenetic Modifications in the Genome of Multidrug Resistant MRSA Strain Staphylococcus aureus ATCC BAA-39 by Reva, Oleg N, Korotetskiy, Ilya S, Joubert, Monique, Shilov, Sergey V, Jumagaziyeva, Ardak B, Suldina, Natalya A, Ilin, Alexandr I

“…Application of supplementary drugs which increase susceptibility of pathogenic bacteria to antibiotics is a promising yet unexplored approach to overcome the…”
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Functional diversity of nanohaloarchaea within xylan-degrading consortia by Reva, Oleg, Messina, Enzo, La Cono, Violetta, Crisafi, Francesca, Smedile, Francesco, La Spada, Gina, Marturano, Laura, Selivanova, Elena A, Rohde, Manfred, Krupovic, Mart, Yakimov, Michail M

“…Extremely halophilic representatives of the phylum Nanohaloarchaeota (members of the DPANN superphyla) are obligately associated with extremely halophilic…”
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Gene expression regulation in the plant growth promoting Bacillus atrophaeus UCMB-5137 stimulated by maize root exudates by Mwita, Liberata, Chan, Wai Yin, Pretorius, Theresa, Lyantagaye, Sylvester L., Lapa, Svitlana V., Avdeeva, Lilia V., Reva, Oleg N.

“…Despite successful use of Plant Growth Promoting Rhizobacteria (PGPR) in agriculture, little is known about specific mechanisms of gene regulation facilitating…”
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