Search Results - "RENUSE, Santosh"

BioSITe: A Method for Direct Detection and Quantitation of Site-Specific Biotinylation by Kim, Dae In, Cutler, Jevon A, Na, Chan Hyun, Reckel, Sina, Renuse, Santosh, Madugundu, Anil K, Tahir, Raiha, Goldschmidt, Hana L, Reddy, Karen L, Huganir, Richard L, Wu, Xinyan, Zachara, Natasha E, Hantschel, Oliver, Pandey, Akhilesh

“…Biotin-based labeling strategies are widely employed to study protein-protein interactions, subcellular proteomes and post-translational modifications, as well…”
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Integrative phosphoproteome and interactome analysis of the role of Ubash3b in BCR-ABL signaling by Cutler, Jevon A., Udainiya, Savita, Madugundu, Anil K., Renuse, Santosh, Xu, Yaoyu, Jung, Jaehun, Kim, Kwang Pyo, Wu, Xinyan, Pandey, Akhilesh

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High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite by Korhonen, Pasi K, Gasser, Robin B, Ma, Guangxu, Wang, Tao, Stroehlein, Andreas J, Young, Neil D, Ang, Ching-Seng, Fernando, Deepani D, Lu, Hieng C, Taylor, Sara, Reynolds, Simone L, Mofiz, Ehtesham, Najaraj, Shivashankar H, Gowda, Harsha, Madugundu, Anil, Renuse, Santosh, Holt, Deborah, Pandey, Akhilesh, Papenfuss, Anthony T, Fischer, Katja

“…The parasitic mite Sarcoptes scabiei is an economically highly significant parasite of the skin of humans and animals worldwide. In humans, this mite causes a…”
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Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells by Madugundu, Anil K., Na, Chan Hyun, Nirujogi, Raja Sekhar, Renuse, Santosh, Kim, Kwang Pyo, Burns, Kathleen H., Wilks, Christopher, Langmead, Ben, Ellis, Shannon E., Collado‐Torres, Leonardo, Halushka, Marc K., Kim, Min‐Sik, Pandey, Akhilesh

“…Understanding the molecular profile of every human cell type is essential for understanding its role in normal physiology and disease. Technological…”
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A mass spectrometry-based targeted assay for detection of SARS-CoV-2 antigen from clinical specimens by Renuse, Santosh, Vanderboom, Patrick M., Maus, Anthony D., Kemp, Jennifer V., Gurtner, Kari M., Madugundu, Anil K., Chavan, Sandip, Peterson, Jane A., Madden, Benjamin J., Mangalaparthi, Kiran K., Mun, Dong-Gi, Singh, Smrita, Kipp, Benjamin R., Dasari, Surendra, Singh, Ravinder J., Grebe, Stefan K., Pandey, Akhilesh

“…The COVID-19 pandemic caused by severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) has overwhelmed health systems worldwide and highlighted…”
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Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery by Pawar, Harsh, Kashyap, Manoj Kumar, Sahasrabuddhe, Nandini A., Renuse, Santosh, Harsha, H. C., Kumar, Praveen, Sharma, Jyoti, Kandasamy, Kumaran, Marimuthu, Arivusudar, Nair, Bipin, Rajagopalan, Sudha, Maharudraiah, Jagadeesha, Premalatha, Chennagiri Shrinivasamurthy, Kumar, Kariyanakatte Veeraiah Veerendra, Vijayakumar, M., Chaerkady, Raghothama, Prasad, Thotterthodi Subrahmanya Keshava, Kumar, Rekha V., Pandey, Akhilesh

“…Esophageal squamous cell carcinoma (ESCC) is among the top ten most frequent malignancies worldwide. In this study, our objective was to identify potential…”
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The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence by Hansen, Anne-Marie, Chaerkady, Raghothama, Sharma, Jyoti, Díaz-Mejía, J Javier, Tyagi, Nidhi, Renuse, Santosh, Jacob, Harrys K C, Pinto, Sneha M, Sahasrabuddhe, Nandini A, Kim, Min-Sik, Delanghe, Bernard, Srinivasan, Narayanaswamy, Emili, Andrew, Kaper, James B, Pandey, Akhilesh

“…While phosphotyrosine modification is an established regulatory mechanism in eukaryotes, it is less well characterized in bacteria due to low prevalence. To…”
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Identification of differentially expressed serum proteins in gastric adenocarcinoma by Subbannayya, Yashwanth, Mir, Sartaj Ahmad, Renuse, Santosh, Manda, Srikanth S., Pinto, Sneha M., Puttamallesh, Vinuth N., Solanki, Hitendra Singh, Manju, H.C., Syed, Nazia, Sharma, Rakesh, Christopher, Rita, Vijayakumar, M., Veerendra Kumar, K.V., Keshava Prasad, T.S., Ramaswamy, Girija, Kumar, Rekha V., Chatterjee, Aditi, Pandey, Akhilesh, Gowda, Harsha

“…Gastric adenocarcinoma is an aggressive cancer with poor prognosis. Blood based biomarkers of gastric cancer have the potential to improve diagnosis and…”
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Identification of head and neck squamous cell carcinoma biomarker candidates through proteomic analysis of cancer cell secretome by Marimuthu, Arivusudar, Chavan, Sandip, Sathe, Gajanan, Sahasrabuddhe, Nandini A., Srikanth, Srinivas M., Renuse, Santosh, Ahmad, Sartaj, Radhakrishnan, Aneesha, Barbhuiya, Mustafa A., Kumar, Rekha V., Harsha, H.C., Sidransky, David, Califano, Joseph, Pandey, Akhilesh, Chatterjee, Aditi

“…Protein biomarker discovery for early detection of head and neck squamous cell carcinoma (HNSCC) is a crucial unmet need to improve patient outcomes. Mass…”
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Phosphotyrosine profiling of human cerebrospinal fluid by Sathe, Gajanan, Na, Chan Hyun, Renuse, Santosh, Madugundu, Anil, Albert, Marilyn, Moghekar, Abhay, Pandey, Akhilesh

“…Cerebrospinal fluid (CSF) is an important source of potential biomarkers that affect the brain. Biomarkers for neurodegenerative disorders are needed to assist…”
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Generation and proteome profiling of PBMC-originated, iPSC-derived lentoid bodies by Ali, Muhammad, Kabir, Firoz, Raskar, Snehal, Renuse, Santosh, Na, Chan Hyun, Delannoy, Michael, Khan, Shahid Y., Riazuddin, S. Amer

“…•Reprogrammed human peripheral blood mononuclear cells (PBMCs) into induced pluripotent stem cells (iPSCs), and generated lens-like organoid structures,…”
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Proteomic analysis of human osteoarthritis synovial fluid by Balakrishnan, Lavanya, Nirujogi, Raja Sekhar, Ahmad, Sartaj, Bhattacharjee, Mitali, Manda, Srikanth S, Renuse, Santosh, Kelkar, Dhanashree S, Subbannayya, Yashwanth, Raju, Rajesh, Goel, Renu, Thomas, Joji Kurian, Kaur, Navjyot, Dhillon, Mukesh, Tankala, Shantal Gupta, Jois, Ramesh, Vasdev, Vivek, Ramachandra, Yl, Sahasrabuddhe, Nandini A, Prasad, Ts Keshava, Mohan, Sujatha, Gowda, Harsha, Shankar, Subramanian, Pandey, Akhilesh

“…Osteoarthritis is a chronic musculoskeletal disorder characterized mainly by progressive degradation of the hyaline cartilage. Patients with osteoarthritis…”
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Silencing of high-mobility group box 2 (HMGB2) modulates cisplatin and 5-fluorouracil sensitivity in head and neck squamous cell carcinoma by Syed, Nazia, Chavan, Sandip, Sahasrabuddhe, Nandini A., Renuse, Santosh, Sathe, Gajanan, Nanjappa, Vishalakshi, Radhakrishnan, Aneesha, Raja, Remya, Pinto, Sneha M., Srinivasan, Anand, Prasad, T. S. Keshava, Srikumar, Kotteazeth, Gowda, Harsha, Santosh, Vani, Sidransky, David, Califano, Joseph A., Pandey, Akhilesh, Chatterjee, Aditi

“…Dysregulation of protein expression is associated with most diseases including cancer. MS‐based proteomic analysis is widely employed as a tool to study…”
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Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients by Balakrishnan, Lavanya, Bhattacharjee, Mitali, Ahmad, Sartaj, Nirujogi, Raja Sekhar, Renuse, Santosh, Subbannayya, Yashwanth, Marimuthu, Arivusudar, Srikanth, Srinivas M, Raju, Rajesh, Dhillon, Mukesh, Kaur, Navjyot, Jois, Ramesh, Vasudev, Vivek, Ramachandra, Yl, Sahasrabuddhe, Nandini A, Prasad, Ts Keshava, Mohan, Sujatha, Gowda, Harsha, Shankar, Subramanian, Pandey, Akhilesh

“…Rheumatoid arthritis and osteoarthritis are two common musculoskeletal disorders that affect the joints. Despite high prevalence rates, etiological factors…”
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Mitochondrial localization and moderated activity are key to murine erythroid enucleation by Liang, Raymond, Menon, Vijay, Qiu, Jiajing, Arif, Tasleem, Renuse, Santosh, Lin, Miao, Nowak, Roberta, Hartmann, Boris, Tzavaras, Nikos, Benson, Deanna L., Chipuk, Jerry E., Fribourg, Miguel, Pandey, Akhilesh, Fowler, Velia, Ghaffari, Saghi

“…Mammalian red blood cells (RBCs), which primarily contain hemoglobin, exemplify an elaborate maturation process, with the terminal steps of RBC generation…”
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Endoxifen downregulates AKT phosphorylation through protein kinase C beta 1 inhibition in ERα+ breast cancer by Jayaraman, Swaathi, Wu, Xinyan, Kalari, Krishna R., Tang, Xiaojia, Kuffel, Mary J., Bruinsma, Elizabeth S., Jalali, Shahrzad, Peterson, Kevin L., Correia, Cristina, Kudgus, Rachel A., Kaufmann, Scott H., Renuse, Santosh, Ingle, James N., Reid, Joel M., Ames, Matthew M., Fields, Alan P., Schellenberg, Matthew J., Hawse, John R., Pandey, Akhilesh, Goetz, Matthew P.

“…Endoxifen, a secondary tamoxifen metabolite, is a potent antiestrogen exhibiting estrogen receptor alpha (ERα) binding at nanomolar concentrations. Phase I/II…”
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A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry by Chaerkady, Raghothama, Kelkar, Dhanashree S, Muthusamy, Babylakshmi, Kandasamy, Kumaran, Dwivedi, Sutopa B, Sahasrabuddhe, Nandini A, Kim, Min-Sik, Renuse, Santosh, Pinto, Sneha M, Sharma, Rakesh, Pawar, Harsh, Sekhar, Nirujogi Raja, Mohanty, Ajeet Kumar, Getnet, Derese, Yang, Yi, Zhong, Jun, Dash, Aditya P, MacCallum, Robert M, Delanghe, Bernard, Mlambo, Godfree, Kumar, Ashwani, Keshava Prasad, T S, Okulate, Mobolaji, Kumar, Nirbhay, Pandey, Akhilesh

“…Anopheles gambiae is a major mosquito vector responsible for malaria transmission, whose genome sequence was reported in 2002. Genome annotation is a…”
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Comparison of anti-peptide and anti-protein antibody-based purification techniques for detection of SARS-CoV-2 by targeted LC-MS/MS by Maus, Anthony, Renuse, Santosh, Kemp, Jennifer, Moehnke, Kayla, Mangalaparthi, Kiran K., Chavan, Sandip, Madugundu, Anil K., Vanderboom, Patrick M., Dasari, Surendra, Kipp, Benjamin R., Singh, Ravinder J., Grebe, Stefan K., Pandey, Akhilesh

“…•Detection of SARS-CoV-2 proteins from nasopharyngeal swabs using liquid chromatography-tandem mass spectrometry.•Direct comparison of anti-peptide and…”
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Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts by Wu, Xinyan, Zahari, Muhammad Saddiq, Renuse, Santosh, Sahasrabuddhe, Nandini A, Chaerkady, Raghothama, Kim, Min-Sik, Fackler, Mary Jo, Stampfer, Martha, Gabrielson, Edward, Sukumar, Saraswati, Pandey, Akhilesh

“…Cancer-associated fibroblasts (CAFs) are one of the most important components of tumor stroma and play a key role in modulating tumor growth. However, a…”
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SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome by Kashyap, Manoj Kumar, Harsha, H. C., Renuse, Santosh, Pawar, Harsh, Sahasrabuddhe, Nandini A., Kim, Min-Sik, Marimuthu, Arivusudar, Keerthikumar, Shivakumar, Muthusamy, Babylakshmi, Kandasamy, Kumaran, Subbannayya, Yashwanth, Prasad, Thottethodi Subrahmanya Keshava, Mahmood, Riaz, Chaerkady, Raghothama, Meltzer, Stephen J., Kumar, Rekha V., Rustgi, Anil K., Pandey, Akhilesh

“…The identification of secreted proteins that are differentially expressed between non-neoplastic and esophageal squamous cell carcinoma (ESCC) cells can…”
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