Search Results - "RATTEI, Thomas"

probeBase--an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016 by Greuter, Daniel, Loy, Alexander, Horn, Matthias, Rattei, Thomas

“…probeBase http://www.probebase.net is a manually maintained and curated database of rRNA-targeted oligonucleotide probes and primers. Contextual information…”
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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses by Huerta-Cepas, Jaime, Szklarczyk, Damian, Heller, Davide, Hernández-Plaza, Ana, Forslund, Sofia K, Cook, Helen, Mende, Daniel R, Letunic, Ivica, Rattei, Thomas, Jensen, Lars J, von Mering, Christian, Bork, Peer

“…Abstract eggNOG is a public database of orthology relationships, gene evolutionary histories and functional annotations. Here, we present version 5.0,…”
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Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases by Müller, Albert Leopold, Kjeldsen, Kasper Urup, Rattei, Thomas, Pester, Michael, Loy, Alexander

“…The energy metabolism of essential microbial guilds in the biogeochemical sulfur cycle is based on a DsrAB-type dissimilatory (bi)sulfite reductase that either…”
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Gepard: a rapid and sensitive tool for creating dotplots on genome scale by Krumsiek, Jan, Arnold, Roland, Rattei, Thomas

“…Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot…”
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Complete nitrification by Nitrospira bacteria by Daims, Holger, Lebedeva, Elena V., Pjevac, Petra, Han, Ping, Herbold, Craig, Albertsen, Mads, Jehmlich, Nico, Palatinszky, Marton, Vierheilig, Julia, Bulaev, Alexandr, Kirkegaard, Rasmus H., von Bergen, Martin, Rattei, Thomas, Bendinger, Bernd, Nielsen, Per H., Wagner, Michael

“…Nitrification, the oxidation of ammonia via nitrite to nitrate, has always been considered to be a two-step process catalysed by chemolithoautotrophic…”
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Man-made microbial resistances in built environments by Mahnert, Alexander, Moissl-Eichinger, Christine, Zojer, Markus, Bogumil, David, Mizrahi, Itzhak, Rattei, Thomas, Martinez, José Luis, Berg, Gabriele

“…Antimicrobial resistance is a serious threat to global public health, but little is known about the effects of microbial control on the microbiota and its…”
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NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite‐oxidizing Nitrospira by Pester, Michael, Maixner, Frank, Berry, David, Rattei, Thomas, Koch, Hanna, Lücker, Sebastian, Nowka, Boris, Richter, Andreas, Spieck, Eva, Lebedeva, Elena, Loy, Alexander, Wagner, Michael, Daims, Holger

“…Nitrospira are the most widespread and diverse known nitrite‐oxidizing bacteria and key nitrifiers in natural and engineered ecosystems. Nevertheless, their…”
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Independent evolution of the core domain and its flanking sequences in small heat shock proteins by Kriehuber, Thomas, Rattei, Thomas, Weinmaier, Thomas, Bepperling, Alexander, Haslbeck, Martin, Buchner, Johannes

“…Small heat shock proteins (sHsps) are molecular chaperones involved in maintaining protein homeostasis; they have also been implicated in protein folding…”
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amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions by Pester, Michael, Rattei, Thomas, Flechl, Stefan, Gröngröft, Alexander, Richter, Andreas, Overmann, Jörg, Reinhold-Hurek, Barbara, Loy, Alexander, Wagner, Michael

“…Summary Ammonia‐oxidizing archaea (AOA) play an important role in nitrification and many studies exploit their amoA genes as marker for their diversity and…”
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Functionally relevant diversity of closely related Nitrospira in activated sludge by Gruber-Dorninger, Christiane, Pester, Michael, Kitzinger, Katharina, Savio, Domenico F, Loy, Alexander, Rattei, Thomas, Wagner, Michael, Daims, Holger

“…Nitrospira are chemolithoautotrophic nitrite-oxidizing bacteria that catalyze the second step of nitrification in most oxic habitats and are important for…”
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DeepNOG: fast and accurate protein orthologous group assignment by Feldbauer, Roman, Gosch, Lukas, Lüftinger, Lukas, Hyden, Patrick, Flexer, Arthur, Rattei, Thomas

“…Abstract Motivation Protein orthologous group databases are powerful tools for evolutionary analysis, functional annotation or metabolic pathway modeling…”
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Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member by Hausmann, Bela, Pelikan, Claus, Rattei, Thomas, Loy, Alexander, Pester, Michael

“…Microbial diversity in the environment is mainly concealed within the rare biosphere (all species with <0.1% relative abundance). While dormancy explains a…”
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Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria by Lücker, Sebastian, Wagner, Michael, Maixner, Frank, Pelletier, Eric, Koch, Hanna, Vacherie, Benoit, Rattei, Thomas, Damsté, Jaap S. Sinninghe, Spieck, Eva, Le Paslier, Denis, Daims, Holger

“…Nitrospira are barely studied and mostly uncultured nitrite-oxidizing bacteria, which are, according to molecular data, among the most diverse and widespread…”
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Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress by Sheibani-Tezerji, Raheleh, Rattei, Thomas, Sessitsch, Angela, Trognitz, Friederike, Mitter, Birgit

“…It is widely accepted that bacterial endophytes actively colonize plants, interact with their host, and frequently show beneficial effects on plant growth and…”
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Prediction of microbial phenotypes based on comparative genomics by Feldbauer, Roman, Schulz, Frederik, Horn, Matthias, Rattei, Thomas

“…The accessibility of almost complete genome sequences of uncultivable microbial species from metagenomes necessitates computational methods predicting…”
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Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota by Spang, Anja, Hatzenpichler, Roland, Brochier-Armanet, Céline, Rattei, Thomas, Tischler, Patrick, Spieck, Eva, Streit, Wolfgang, Stahl, David A, Wagner, Michael, Schleper, Christa

“…Globally distributed archaea comprising ammonia oxidizers of moderate terrestrial and marine environments are considered the most abundant archaeal organisms…”
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Genome-Wide Mutation Scoring for Machine-Learning-Based Antimicrobial Resistance Prediction by Májek, Peter, Lüftinger, Lukas, Beisken, Stephan, Rattei, Thomas, Materna, Arne

“…The prediction of antimicrobial resistance (AMR) based on genomic information can improve patient outcomes. Genetic mechanisms have been shown to explain AMR…”
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Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets by Walker, Alesia, Pfitzner, Barbara, Harir, Mourad, Schaubeck, Monika, Calasan, Jelena, Heinzmann, Silke S., Turaev, Dmitrij, Rattei, Thomas, Endesfelder, David, Castell, Wolfgang zu, Haller, Dirk, Schmid, Michael, Hartmann, Anton, Schmitt-Kopplin, Philippe

“…The gut microbiota generates a huge pool of unknown metabolites, and their identification and characterization is a key challenge in metabolomics. However,…”
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The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer by Lücker, Sebastian, Nowka, Boris, Rattei, Thomas, Spieck, Eva, Daims, Holger

“…In marine systems, nitrate is the major reservoir of inorganic fixed nitrogen. The only known biological nitrate-forming reaction is nitrite oxidation, but…”
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A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment by Bernard, Clément, Locard-Paulet, Marie, Noël, Cyril, Duchateau, Magalie, Giai Gianetto, Quentin, Moumen, Bouziane, Rattei, Thomas, Hechard, Yann, Jensen, Lars Juhl, Matondo, Mariette, Samba-Louaka, Ascel

“…Encystment is a common stress response of most protists, including free-living amoebae. Cyst formation protects the amoebae from eradication and can increase…”
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