Search Results - "RAMOS, Rommel T. J"

PanWeb: A web interface for pan-genomic analysis by Pantoja, Yan, Pinheiro, Kenny, Veras, Allan, Araújo, Fabrício, Lopes de Sousa, Ailton, Guimarães, Luis Carlos, Silva, Artur, Ramos, Rommel T J

“…With increased production of genomic data since the advent of next-generation sequencing (NGS), there has been a need to develop new bioinformatics tools and…”
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GapBlaster-A Graphical Gap Filler for Prokaryote Genomes by de Sá, Pablo H C G, Miranda, Fábio, Veras, Adonney, de Melo, Diego Magalhães, Soares, Siomar, Pinheiro, Kenny, Guimarães, Luis, Azevedo, Vasco, Silva, Artur, Ramos, Rommel T J

“…The advent of NGS (Next Generation Sequencing) technologies has resulted in an exponential increase in the number of complete genomes available in biological…”
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Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics by Baraúna, Rafael A, Ramos, Rommel T J, Veras, Adonney A O, Pinheiro, Kenny C, Benevides, Leandro J, Viana, Marcus V C, Guimarães, Luís C, Edman, Judy M, Spier, Sharon J, Azevedo, Vasco, Silva, Artur

“…Seven genomes of Corynebacterium pseudotuberculosis biovar equi were sequenced on the Ion Torrent PGM platform, generating high-quality scaffolds over 2.35…”
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PIPS: pathogenicity island prediction software by Soares, Siomar C, Abreu, Vinícius A C, Ramos, Rommel T J, Cerdeira, Louise, Silva, Artur, Baumbach, Jan, Trost, Eva, Tauch, Andreas, Hirata, Jr, Raphael, Mattos-Guaraldi, Ana L, Miyoshi, Anderson, Azevedo, Vasco

“…The adaptability of pathogenic bacteria to hosts is influenced by the genomic plasticity of the bacteria, which can be increased by such mechanisms as…”
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High-throughput sequencing of black pepper root transcriptome by Gordo, Sheila M C, Pinheiro, Daniel G, Moreira, Edith C O, Rodrigues, Simone M, Poltronieri, Marli C, de Lemos, Oriel F, da Silva, Israel Tojal, Ramos, Rommel T J, Silva, Artur, Schneider, Horacio, Silva, Jr, Wilson A, Sampaio, Iracilda, Darnet, Sylvain

“…Black pepper (Piper nigrum L.) is one of the most popular spices in the world. It is used in cooking and the preservation of food and even has medicinal…”
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Reference genes for RT-qPCR studies in Corynebacterium pseudotuberculosis identified through analysis of RNA-seq data by Carvalho, Daiane M, de Sá, Pablo H, Castro, Thiago L. P, Carvalho, Rodrigo D, Pinto, Anne, Gil, Danilo J. P, Bagano, Priscilla, Bastos, Bruno, Costa, Lilia F. M, Meyer, Roberto, Silva, Artur, Azevedo, Vasco, Ramos, Rommel T. J, Pacheco, Luis G. C

“…Reference genes presenting stable expression profiles over a wide variety of conditions are required in relative expression studies of specific bacterial genes…”
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GIPSy: Genomic island prediction software by Soares, Siomar C., Geyik, Hakan, Ramos, Rommel T.J., de Sá, Pablo H.C.G., Barbosa, Eudes G.V., Baumbach, Jan, Figueiredo, Henrique C.P., Miyoshi, Anderson, Tauch, Andreas, Silva, Artur, Azevedo, Vasco

“…•The first life-style-specific GEI prediction software to predict all classes of GEIs.•GIPSy predicted 13 pathogenicity islands of Escherichia coli…”
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Evaluation of the Common Molecular Basis in Alzheimer's and Parkinson's Diseases by Rana, Pratip, Franco, Edian F, Rao, Yug, Syed, Khajamoinuddin, Barh, Debmalya, Azevedo, Vasco, Ramos, Rommel T J, Ghosh, Preetam

“…Alzheimer's disease (AD) and Parkinson's disease (PD) are the most common neurodegenerative disorders related to aging. Though several risk factors are shared…”
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Extended Spectrum Beta-Lactamase-Producing Gram-Negative Bacteria Recovered From an Amazonian Lake Near the City of Belém, Brazil by Freitas, Dhara Y, Araújo, Susana, Folador, Adriana R C, Ramos, Rommel T J, Azevedo, Juliana S N, Tacão, Marta, Silva, Artur, Henriques, Isabel, Baraúna, Rafael A

“…Aquatic systems have been described as antibiotic resistance reservoirs, where water may act as a vehicle for the spread of resistant bacteria and resistance…”
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The pan-genome of the emerging multidrug-resistant pathogen Corynebacterium striatum by Jesus, Hendor N. R., Ramos, Juliana N., Rocha, Danilo J. P. G., Alves, Daniele A., Silva, Carolina S., Cruz, João V. O., Vieira, Verônica V., Souza, Cassius, Santos, Louisy S., Navas, Jesus, Ramos, Rommel T. J., Azevedo, Vasco, Aguiar, Eric R. G. R., Mattos-Guaraldi, Ana L., Pacheco, Luis G. C.

“…Corynebacterium striatum , a common constituent of the human skin microbiome, is now considered an emerging multidrug-resistant pathogen of immunocompromised…”
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Pan-genomic analysis of Corynebacterium amycolatum gives insights into molecular mechanisms underpinning the transition to a pathogenic phenotype by Jesus, Hendor N. R., Rocha, Danilo J. P. G., Ramos, Rommel T. J., Silva, Artur, Brenig, Bertram, Góes-Neto, Aristóteles, Costa, Mateus M., Soares, Siomar C., Azevedo, Vasco, Aguiar, Eric R. G. R., Martínez-Martínez, Luiz, Ocampo, Alain, Alibi, Sana, Dorta, Alexis, Pacheco, Luis G. C., Navas, Jesus

“…Corynebacterium amycolatum is a nonlipophilic coryneform which is increasingly being recognized as a relevant human and animal pathogen showing multidrug…”
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Text mining for identification of biological entities related to antibiotic resistant organisms by Fortunato Costa, Kelle, Almeida Araújo, Fabrício, Morais, Jefferson, Lisboa Frances, Carlos Renato, Ramos, Rommel T J

“…Antimicrobial resistance is a significant public health problem worldwide. In recent years, the scientific community has been intensifying efforts to combat…”
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PhageWeb - Web Interface for Rapid Identification and Characterization of Prophages in Bacterial Genomes by de Sousa, Ailton Lopes, Maués, Dener, Lobato, Amália, Franco, Edian F, Pinheiro, Kenny, Araújo, Fabrício, Pantoja, Yan, da Costa da Silva, Artur Luiz, Morais, Jefferson, Ramos, Rommel T J

“…This study developed a computational tool with a graphical interface and a web-service that allows the identification of phage regions through homology search…”
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Complete Genome Sequence of Corynebacterium pseudotuberculosis Strain PA01, Isolated from Sheep in Pará, Brazil by Alves, Jorianne T C, Veras, Adonney A O, Cavalcante, Ana Lídia Q, de Sá, Pablo H C G, Dias, Larissa M, Guimarães, Luis C, Morais, Ezequiel, Silva, André G M, Azevedo, Vasco, Ramos, Rommel T J, Silva, Artur, Carneiro, Adriana R

“…Corynebacterium pseudotuberculosis is the etiological agent of caseous lymphadenitis disease. In this work, we present the first complete genome sequence of…”
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SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology by Mariano, Diego C B, Pereira, Felipe L, Aguiar, Edgar L, Oliveira, Letícia C, Benevides, Leandro, Guimarães, Luís C, Folador, Edson L, Sousa, Thiago J, Ghosh, Preetam, Barh, Debmalya, Figueiredo, Henrique C P, Silva, Artur, Ramos, Rommel T J, Azevedo, Vasco A C

“…The evolution of Next-Generation Sequencing (NGS) has considerably reduced the cost per sequenced-base, allowing a significant rise of sequencing projects,…”
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Co-Expression Networks for Causal Gene Identification Based on RNA-Seq Data of Corynebacterium pseudotuberculosis by Franco, Edian F, Rana, Pratip, Queiroz Cavalcante, Ana Lidia, da Silva, Artur Luiz, Cybelle Pinto Gomide, Anne, Carneiro Folador, Adriana R, Azevedo, Vasco, Ghosh, Preetam, T J Ramos, Rommel

“…is a Gram-positive bacterium that causes caseous lymphadenitis, a disease that predominantly affects sheep, goat, cattle, buffalo, and horses, but has also…”
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Genome Sequence of Pseudomonas sp. Strain LAP_36, A Rhizosphere Bacterium Isolated from King George Island, Antarctica by Silveira, Sarah Mederos da, Silva, Sheila da, Macrae, Andrew, Ramos, Rommel T J, Araújo, Fabrício A, Schultz, Júnia, Góes-Neto, Aristóteles, Costa, Mateus Matiuzzi da, Soares, Siomar de Castro, Azevedo, Vasco A C, Aburjaile, Flávia F, Brenig, Bertram, Rosado, Alexandre S, Oliveira, Selma Soares de

“…Pseudomonas sp. strain LAP_36 was isolated from rhizosphere soil from Deschampsia antarctica on King George Island, South Shetland Islands, Antarctica. Here,…”
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The impact of quality filter for RNA-Seq by de Sá, Pablo H.C.G., Veras, Adonney A.O., Carneiro, Adriana R., Pinheiro, Kenny C., Pinto, Anne C., Soares, Siomar C., Schneider, Maria P.C., Azevedo, Vasco, Silva, Artur, Ramos, Rommel T.J.

“…With the emergence of large-scale sequencing platforms since 2005, there has been a great revolution regarding methods for decoding DNA sequences, which have…”
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Omics profiles used to evaluate the gene expression of Exiguobacterium antarcticum B7 during cold adaptation by Dall'Agnol, Hivana P M B, Baraúna, Rafael A, de Sá, Pablo H C G, Ramos, Rommel T J, Nóbrega, Felipe, Nunes, Catarina I P, das Graças, Diego A, Carneiro, Adriana R, Santos, Daniel M, Pimenta, Adriano M C, Carepo, Marta S P, Azevedo, Vasco, Pellizari, Vivian H, Schneider, Maria P C, Silva, Artur

“…Exiguobacterium antarcticum strain B7 is a Gram-positive psychrotrophic bacterial species isolated in Antarctica. Although this bacteria has been poorly…”
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Complete Genome Sequences of Corynebacterium pseudotuberculosis Strains 3/99-5 and 42/02-A, Isolated from Sheep in Scotland and Australia, Respectively by PETHICK, Florence E, LAINSON, Alex F, BARBOSA, Maria S, PINTO, Anne C, DOS SANTOS, Anderson R, SOARES, Siomar C, ALMEIDA, Sintia S, GUIMARAES, Luis C, ABURJAILE, Flavia F, ABREU, Vinicius A. C, RIBEIRO, Dayana, FIAUX, Karina K, YAGA, Raja, DINIZ, Carlos A. A, BARBOSA, Eudes G. V, PEREIRA, Ulisses P, HASSAN, Syed S, ALI, Amjad, BAKHTIAR, Syeda M, DORELLA, Fernanda A, CARNEIRO, Adriana R, RAMOS, Rommel T. J, ROCHA, Flavia S, FLOCKHART, Allen, SCHNEIDER, Maria P. C, MIYOSHI, Anderson, AZEVEDO, Vasco, FONTAINE, Michael C, SMITH, David G. E, DONACHIE, Willie, CERDEIRA, Louise T, SILVA, Artur, BOL, Erik, LOPES, Thiago S

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