Search Results - "RAITH, Meredith"

Droplet digital PCR for simultaneous quantification of general and human-associated fecal indicators for water quality assessment by Cao, Yiping, Raith, Meredith R., Griffith, John F.

“…Despite wide application to beach water monitoring and microbial source identification, results produced by quantitative PCR (qPCR) methods are subject to bias…”
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Testing of General and Human-Associated Fecal Contamination in Waters by Cao, Yiping, Raith, Meredith R, Griffith, John F

“…qPCR has become increasingly popular for microbial water quality testing because it is faster, more specific, and more flexible than culture-based methods…”
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Regional Assessment of Human Fecal Contamination in Southern California Coastal Drainages by Cao, Yiping, Raith, Meredith R, Smith, Paul D, Griffith, John F, Weisberg, Stephen B, Schriewer, Alexander, Sheldon, Andrew, Crompton, Chris, Amenu, Geremew G, Gregory, Jason, Guzman, Joe, Goodwin, Kelly D, Othman, Laila, Manasjan, Mayela, Choi, Samuel, Rapoport, Shana, Steele, Syreeta, Nguyen, Tommy, Yu, Xueyuan

“…Host-associated genetic markers that allow for fecal source identification have been used extensively as a diagnostic tool to determine fecal sources within…”
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A Duplex Digital PCR Assay for Simultaneous Quantification of the Enterococcus spp. and the Human Fecal-associated HF183 Marker in Waters by Cao, Yiping, Raith, Meredith R, Griffith, John F

“…This manuscript describes a duplex digital PCR assay (EntHF183 dPCR) for simultaneous quantification of Enterococcus spp. and the human fecal-associated HF183…”
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Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources by Raith, Meredith R., Kelty, Catherine A., Griffith, John F., Schriewer, Alexander, Wuertz, Stefan, Mieszkin, Sophie, Gourmelon, Michele, Reischer, Georg H., Farnleitner, Andreas H., Ervin, Jared S., Holden, Patricia A., Ebentier, Darcy L., Jay, Jennifer A., Wang, Dan, Boehm, Alexandria B., Aw, Tiong Gim, Rose, Joan B., Balleste, E., Meijer, W.G., Sivaganesan, Mano, Shanks, Orin C.

“…The State of California has mandated the preparation of a guidance document on the application of fecal source identification methods for recreational water…”
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Bacteroidales terminal restriction fragment length polymorphism (TRFLP) for fecal source differentiation in comparison to and in combination with universal bacteria TRFLP by Cao, Yiping, Van De Werfhorst, Laurie C., Scott, Elizabeth A., Raith, Meredith R., Holden, Patricia A., Griffith, John F.

“…Terminal restriction fragment length polymorphism (TRFLP) is an attractive community analysis method for microbial source tracking (MST) because it is…”
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A Duplex Digital PCR Assay for Simultaneous Quantification of the Enterococcus spp. and the Human Fecal-associated HF183 Marker in Waters by Cao, Yiping, Raith, Meredith R., Griffith, John F.

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Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods by Ebentier, Darcy L., Hanley, Kaitlyn T., Cao, Yiping, Badgley, Brian D., Boehm, Alexandria B., Ervin, Jared S., Goodwin, Kelly D., Gourmelon, Michèle, Griffith, John F., Holden, Patricia A., Kelty, Catherine A., Lozach, Solen, McGee, Charles, Peed, Lindsay A., Raith, Meredith, Ryu, Hodon, Sadowsky, Michael J., Scott, Elizabeth A., Domingo, Jorge Santo, Schriewer, Alexander, Sinigalliano, Christopher D., Shanks, Orin C., Van De Werfhorst, Laurie C., Wang, Dan, Wuertz, Stefan, Jay, Jennifer A.

“…Many PCR-based methods for microbial source tracking (MST) have been developed and validated within individual research laboratories. Inter-laboratory…”
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Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources by Sinigalliano, Christopher D., Ervin, Jared S., Van De Werfhorst, Laurie C., Badgley, Brian D., Ballesté, Elisenda, Bartkowiak, Jakob, Boehm, Alexandria B., Byappanahalli, Muruleedhara, Goodwin, Kelly D., Gourmelon, Michèle, Griffith, John, Holden, Patricia A., Jay, Jenny, Layton, Blythe, Lee, Cheonghoon, Lee, Jiyoung, Meijer, Wim G., Noble, Rachel, Raith, Meredith, Ryu, Hodon, Sadowsky, Michael J., Schriewer, Alexander, Wang, Dan, Wanless, David, Whitman, Richard, Wuertz, Stefan, Santo Domingo, Jorge W.

“…Here we report results from a multi-laboratory (n = 11) evaluation of four different PCR methods targeting the 16S rRNA gene of Catellicoccus marimammalium…”
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Multi-laboratory survey of qPCR enterococci analysis method performance in U.S. coastal and inland surface waters by Haugland, Richard A., Siefring, Shawn, Varma, Manju, Oshima, Kevin H., Sivaganesan, Mano, Cao, Yiping, Raith, Meredith, Griffith, John, Weisberg, Stephen B., Noble, Rachel T., Blackwood, A. Denene, Kinzelman, Julie, Anan’eva, Tamara, Bushon, Rebecca N., Stelzer, Erin A., Harwood, Valarie J., Gordon, Katrina V., Sinigalliano, Christopher

“…Quantitative polymerase chain reaction (qPCR) has become a frequently used technique for quantifying enterococci in recreational surface waters, but there are…”
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Detection limits and cost comparisons of human- and gull-associated conventional and quantitative PCR assays in artificial and environmental waters by Riedel, Timothy E., Zimmer-Faust, Amity G., Thulsiraj, Vanessa, Madi, Tania, Hanley, Kaitlyn T., Ebentier, Darcy L., Byappanahalli, Muruleedhara, Layton, Blythe, Raith, Meredith, Boehm, Alexandria B., Griffith, John F., Holden, Patricia A., Shanks, Orin C., Weisberg, Stephen B., Jay, Jennifer A.

“…Some molecular methods for tracking fecal pollution in environmental waters have both PCR and quantitative PCR (qPCR) assays available for use. To assist…”
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Bacteroidales terminal restriction fragment length polymorphism (TRFLP) for fecal source differentiation in comparison to and in combination with universal bacteria TRFLP: Microbial source tracking by YIPING CAO, VAN DE WERFHORST, Laurie C, SCOTT, Elizabeth A, RAITH, Meredith R, HOLDEN, Patricia A, GRIFFITH, John F

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Phylogeny and species diversity of Gulf of California oysters (Ostreidae) inferred from mitochondrial DNA by Raith, Meredith

“…The Olympia oyster, Ostrea lurida Carpenter 1864, is the only native oyster on the west coast of the United States and is the focus of current restoration…”
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Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources: Microbial source tracking by RAITH, Meredith R, KELTY, Catherine A, HOLDEN, Patricia A, EBENTIER, Darcy L, JAY, Jennifer A, DAN WANG, BOEHM, Alexandria B, TIONG GIM AW, ROSE, Joan B, BALLESTE, E, MEIJER, W. G, SIVAGANESAN, Mano, GRIFFITH, John F, SHANKS, Orin C, SCHRIEWER, Alexander, WUERTZ, Stefan, MIESZKIN, Sophie, GOURMELON, Michele, REISCHER, Georg H, FARNLEITNER, Andreas H, ERVIN, Jared S

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Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources: Microbial source tracking by SINIGALLIANO, Christopher D, ERVIN, Jared S, GRIFFITH, John, HOLDEN, Patricia A, JAY, Jenny, LAYTON, Blythe, CHEONGHOON LEE, JIYOUNG LEE, MEIJER, Wim G, NOBLE, Rachel, RAITH, Meredith, HODON RYU, VAN DE WERFHORST, Laurie C, SADOWSKY, Michael J, SCHRIEWER, Alexander, DAN WANG, WANLESS, David, WHITMAN, Richard, WUERTZ, Stefan, SANTO DOMINGO, Jorge W, BADGLEY, Brian D, BALLESTE, Elisenda, BARTKOWIAK, Jakob, BOEHM, Alexandria B, BYAPPANAHALLI, Muruleedhara, GOODWIN, Kelly D, GOURMELON, Michèle

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Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods: Microbial source tracking by EBENTIER, Darcy L, HANLEY, Kaitlyn T, KELTY, Catherine A, LOZACH, Solen, MCGEE, Charles, PEED, Lindsay A, RAITH, Meredith, RYU, Hodon, SADOWSKY, Michael J, SCOTT, Elizabeth A, SANTO DOMINGO, Jorge, SCHRIEWER, Alexander, YIPING CAO, SINIGALLIANO, Christopher D, SHANKS, Orin C, VAN DE WERFHORST, Laurie C, DAN WANG, WUERTZ, Stefan, JAY, Jennifer A, BADGLEY, Brian D, BOEHM, Alexandria B, ERVIN, Jared S, GOODWIN, Kelly D, GOURMELON, Michèle, GRIFFITH, John F, HOLDEN, Patricia A

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Phylogeny and species diversity of Gulf of California oysters (Ostreidae) inferred from mitochondrial DNA by Raith, Meredith

“…The Olympia oyster, Ostrea lurida Carpenter 1864, is the only native oyster on the west coast of the United States and is the focus of current restoration…”
Get full text