Search Results - "RADUNE, Diana"

Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1 by Mongodin, Emmanuel F, Shapir, Nir, Daugherty, Sean C, DeBoy, Robert T, Emerson, Joanne B, Shvartzbeyn, Alla, Radune, Diana, Vamathevan, Jessica, Riggs, Florenta, Grinberg, Viktoria, Khouri, Hoda, Wackett, Lawrence P, Nelson, Karen E, Sadowsky, Michael J

“…Arthrobacter sp. strains are among the most frequently isolated, indigenous, aerobic bacterial genera found in soils. Member of the genus are metabolically and…”
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Genome sequencing and analysis of Yersina pestis KIM D27, an avirulent strain exempt from select agent regulation by Losada, Liliana, Varga, John J, Hostetler, Jessica, Radune, Diana, Kim, Maria, Durkin, Scott, Schneewind, Olaf, Nierman, William C

“…Yersinia pestis is the causative agent of the plague. Y. pestis KIM 10+ strain was passaged and selected for loss of the 102 kb pgm locus, resulting in an…”
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Draft Genome Sequence Determination for Cystic Fibrosis and Chronic Granulomatous Disease Burkholderia multivorans Isolates by Varga, John J, Losada, Liliana, Zelazny, Adrian M, Brinkac, Lauren, Harkins, Derek, Radune, Diana, Hostetler, Jessica, Sampaio, Elizabeth P, Ronning, Catherine M, Nierman, William C, Greenberg, David E, Holland, Steven M, Goldberg, Joanna B

“…Burkholderia multivorans is a Gram-negative bacterium and a member of the Burkholderia cepacia complex, which is frequently associated with respiratory…”
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Optimized Multiplex PCR: Efficiently Closing a Whole-Genome Shotgun Sequencing Project by Tettelin, Hervé, Radune, Diana, Kasif, Simon, Khouri, Hoda, Salzberg, Steven L.

“…A new method has been developed for rapidly closing a large number of gaps in a whole-genome shotgun sequencing project. The method employs multiplex PCR and a…”
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Escherichia coli O-Antigen Gene Clusters of Serogroups O62, O68, O131, O140, O142, and O163: DNA Sequences and Similarity between O62 and O68, and PCR-Based Serogrouping by Liu, Yanhong, Yan, Xianghe, DebRoy, Chitrita, Fratamico, Pina M, Needleman, David S, Li, Robert W, Wang, Wei, Losada, Liliana, Brinkac, Lauren, Radune, Diana, Toro, Magaly, Hegde, Narasimha, Meng, Jianghong

“…The DNA sequence of the O-antigen gene clusters of Escherichia coli serogroups O62, O68, O131, O140, O142, and O163 was determined, and primers based on the…”
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Novel toxin biosynthetic gene cluster in harmful algal bloom-causing Heteroscytonema crispum : Insights into the origins of paralytic shellfish toxins by Stern, David B, Raborn, R Taylor, Lovett, Sean P, Boise, Noelani R, Carasquilla, Lakeshia, Enke, Sana, Radune, Diana, Woodruff, Dana L, Wahl, Karen, Rosovitz, M J

“…Abstract Caused by both eukaryotic dinoflagellates and prokaryotic cyanobacteria, harmful algal blooms (HABs) are events of severe ecological, economic, and…”
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Reducing assembly complexity of microbial genomes with single-molecule sequencing by Koren, Sergey, Harhay, Gregory P, Smith, Timothy P L, Bono, James L, Harhay, Dayna M, Mcvey, Scott D, Radune, Diana, Bergman, Nicholas H, Phillippy, Adam M

“…The short reads output by first- and second-generation DNA sequencing instruments cannot completely reconstruct microbial chromosomes. Therefore, most genomes…”
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Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control by Coyne, Robert S, Hannick, Linda, Shanmugam, Dhanasekaran, Hostetler, Jessica B, Brami, Daniel, Joardar, Vinita S, Johnson, Justin, Radune, Diana, Singh, Irtisha, Badger, Jonathan H, Kumar, Ujjwal, Saier, Milton, Wang, Yufeng, Cai, Hong, Gu, Jianying, Mather, Michael W, Vaidya, Akhil B, Wilkes, David E, Rajagopalan, Vidyalakshmi, Asai, David J, Pearson, Chad G, Findly, Robert C, Dickerson, Harry W, Wu, Martin, Martens, Cindy, Van de Peer, Yves, Roos, David S, Cassidy-Hanley, Donna M, Clark, Theodore G

“…BACKGROUND: Ichthyophthirius multifiliis, commonly known as Ich, is a highly pathogenic ciliate responsible for 'white spot', a disease causing significant…”
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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A by Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, Furutani, Ayako, Ochiai, Hirokazu, Delcher, Arthur L, Kelley, David, Madupu, Ramana, Puiu, Daniela, Radune, Diana, Shumway, Martin, Trapnell, Cole, Aparna, Gudlur, Jha, Gopaljee, Pandey, Alok, Patil, Prabhu B, Ishihara, Hiromichi, Meyer, Damien F, Szurek, Boris, Verdier, Valerie, Koebnik, Ralf, Dow, J Maxwell, Ryan, Robert P, Hirata, Hisae, Tsuyumu, Shinji, Won Lee, Sang, Seo, Young-Su, Sriariyanum, Malinee, Ronald, Pamela C, Sonti, Ramesh V, Van Sluys, Marie-Anne, Leach, Jan E, White, Frank F, Bogdanove, Adam J

“…Xanthomonas oryzae pv. oryzae causes bacterial blight of rice (Oryza sativa L.), a major disease that constrains production of this staple crop in many parts…”
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Whole genome sequencing of diverse Shiga toxin-producing and non-producing Escherichia coli strains reveals a variety of virulence and novel antibiotic resistance plasmids by Losada, Liliana, DebRoy, Chitrita, Radune, Diana, Kim, Maria, Sanka, Ravi, Brinkac, Lauren, Kariyawasam, Subhashinie, Shelton, Daniel, Fratamico, Pina M., Kapur, Vivek, Feng, Peter C.H.

“…The genomes of a diverse set of Escherichia coli, including many Shiga toxin-producing strains of various serotypes were determined. A total of 39 plasmids…”
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Optimized multiplex polymerase chain reaction: an effective method for rapid gap closure by Radune, Diana, Tettelin, Hervé

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Draft Genome Sequences of Five Historical Bacillus anthracis Strains by Sommer, Daniel D, Ratnayake, Shashikala, Radune, Diana, Parker, Kisha, Enke, Sana, Ferguson, Tracy M, Lovett, Marie, Mallonee, Adam, Rae, Zach, Rosovitz, M J, Diviak, Lynn F, Friss, Mary Beth, Klubnik, Joy P, Fronda, Kathy H, Horn, Gregory P, Blank, Thomas E, Pope, Robert K, Hanna, Philip C, Bergman, Nicholas H, Bazinet, Adam L

“…is the causative agent of anthrax, a disease of livestock, wildlife, and humans. Here, we present the draft genome sequences of five historical strains that…”
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Comparative Genomic Evidence for a Close Relationship between the Dimorphic Prosthecate Bacteria Hyphomonas neptunium and Caulobacter crescentus by BADGER, Jonathan H, HOOVER, Timothy R, KHOURI, Hoda M, RADUNE, Diana, SOSA, Julia, DODSON, Robert J, SULLIVAN, Steven A, ROSOVITZ, M. J, MADUPU, Ramana, BRINKAC, Lauren M, DURKIN, A. Scott, DAUGHERTY, Sean C, BRUN, Yves V, KOTHARI, Sagar P, GIGLIO, Michelle Gwinn, LIWEI ZHOU, HAFT, Daniel H, SELENGUT, Jeremy D, DAVIDSEN, Tanja M, QI YANG, ZAFAR, Nikhat, WARD, Naomi L, WEINER, Ronald M, LAUB, Michael T, ALEXANDRE, Gladys, MRAZEK, Jan, QINGHU REN, PAULSEN, Ian T, NELSON, Karen E

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis by Harrington, Robin, Ondov, Brian D, Radune, Diana, Friss, Mary Beth, Klubnik, Joy, Diviak, Lynn, Hnath, Jonathan, Cendrowski, Stephen R, Blank, Thomas E, Karaolis, David, Friedlander, Arthur M, Burans, James P, Rosovitz, M J, Treangen, Todd, Phillippy, Adam M, Bergman, Nicholas H

“…The Bacillus anthracis Carbosap genome, which includes the pXO1 and pXO2 plasmids, has been shown to encode the major B. anthracis virulence factors, yet this…”
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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99.sup.A.sup by Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, Furutani, Ayako, Ochiai, Hirokazu, Delcher, Arthur L, Kelley, David, Madupu, Ramana, Puiu, Daniela, Radune, Diana, Shumway, Martin, Trapnell, Cole, Aparna, Gudlur, Jha, Gopaljee, Pandey, Alok, Patil, Prabhu B, Ishihara, Hiromichi, Meyer, Damien F, Szurek, Boris, Verdier, Valerie, Koebnik, Ralf, Dow, J Maxwell, Ryan, Robert P, Hirata, Hisae, Tsuyumu, Shinji, Lee, Sang Won, Seo, Young-Su, Sriariyanum, Malinee, Ronald, Pamela C, Sonti, Ramesh V, Van Sluys, Marie-Anne, Leach, Jan E, White, Frank F, Bogdanove, Adam J

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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99.sup.A.sup by Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, Furutani, Ayako, Ochiai, Hirokazu, Delcher, Arthur L, Kelley, David, Madupu, Ramana, Puiu, Daniela, Radune, Diana, Shumway, Martin, Trapnell, Cole, Aparna, Gudlur, Jha, Gopaljee, Pandey, Alok, Patil, Prabhu B, Ishihara, Hiromichi, Meyer, Damien F, Szurek, Boris, Verdier, Valerie, Koebnik, Ralf, Dow, J Maxwell, Ryan, Robert P, Hirata, Hisae, Tsuyumu, Shinji, Won Lee, Sang, Ronald, Pamela C, Sonti, Ramesh V, Van Sluys, Marie-Anne, Leach, Jan E, White, Frank F, Bogdanove, Adam J

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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99 super(A) by Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, Furutani, Ayako, Ochiai, Hirokazu, Delcher, Arthur L, Kelley, David, Madupu, Ramana, Puiu, Daniela, Radune, Diana, Shumway, Martin, Trapnell, Cole, Aparna, Gudlur, Jha, Gopaljee, Pandey, Alok, Patil, Prabhu B, Ishihara, Hiromichi, Meyer, Damien F, Szurek, Boris, Verdier, Valerie, Koebnik, Ralf, Dow, J Maxwell, Ryan, Robert P, Hirata, Hisae, Tsuyumu, Shinji, Won Lee, Sang, Ronald, Pamela C, Sonti, Ramesh V, Van Sluys, Marie-Anne, Leach, Jan E, White, Frank F, Bogdanove, Adam J

“…Background Xanthomonas oryzae pv. oryzae causes bacterial blight of rice (Oryza sativa L.), a major disease that constrains production of this staple crop in…”
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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A by Salzberg, Steven L, Sommer, Daniel D, Schatz, Michael C, Phillippy, Adam M, Rabinowicz, Pablo D, Tsuge, Seiji, Furutani, Ayako, Ochiai, Hirokazu, Delcher, Arthur L, Kelley, David, Madupu, Ramana, Puiu, Daniela, Radune, Diana, Shumway, Martin, Trapnell, Cole, Aparna, Gudlur, Jha, Gopaljee, Pandey, Alok, Patil, Prabhu B, Ishihara, Hiromichi, Meyer, Damien F, Szurek, Boris, Verdier, Valerie, Koebnik, Ralf, Dow, J Maxwell, Ryan, Robert P, Hirata, Hisae, Tsuyumu, Shinji, Lee, Sang, Seo, Young-Su, Sriariyanum, Malinee, Ronald, Pamela C, Sonti, Ramesh V, Van Sluys, Marie-Anne, Leach, Jan E, White, Frank F, Bogdanove, Adam J

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Corrections: Genome Analysis of Multiple Pathogenic Isolates of Streptococcus Agalactiae: Implications for the Microbial 'Pan-Genome' by Tettelin, Hervé, Masignani, Vega, Cieslewicz, Michael J., Donati, Claudio, Medini, Duccio, Ward, Naomi L., Angiuoli, Samuel V., Crabtree, Jonathan, Jones, Amanda L., Durkin, A. Scott, DeBoy, Robert T., Davidsen, Tanja M., Mora, Marirosa, Scarselli, Maria, Immaculada Margarit y Ros, Peterson, Jeremy D., Hauser, Christopher R., Sundaram, Jaideep P., Nelson, William C., Madupu, Ramana, Brinkac, Lauren M., Dodson, Robert J., Rosovitz, Mary J., Sullivan, Steven A., Daugherty, Sean C., Haft, Daniel H., Selengut, Jeremy, Gwinn, Michelle L., Zhou, Liwei, Zafar, Nikhat, Khouri, Hoda, Radune, Diana, Dimitrov, George, Watkins, Kisha, Kevin J. B. O'Connor, Smith, Shannon, Utterback, Teresa R., White, Owen, Rubens, Craig E., Grandi, Guido, Madoff, Lawrence C., Kasper, Dennis L., Telford, John L., Wessels, Michael R., Rappuoli, Rino, Fraser, Claire M.

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The genome sequence of Bacillus anthracis and comparison to closely related bacteria by READ, Timothy D, PETERSON, Scott N, HOLTZAPPLE, Erik K, ØKSLAD, Ole Andreas, HELGASON, Erlendur, RILSTONE, Jennifer, WU, Martin, KOLONAY, James F, BEANAN, Maureen J, DODSON, Robert J, BRINKAC, Lauren M, GWINN, Michelle, TOURASSE, Nicolas, DEBOY, Robert T, MADPU, Ramana, DAUGHERTY, Sean C, DURKIN, A. Scott, HAFT, Daniel H, NELSON, William C, PETERSON, Jeremy D, POP, Mihai, KHOURI, Hoda M, RADUNE, Diana, BAILLIE, Les W, BENTON, Jonathan L, MAHAMOUD, Yasmin, LINGXIA JIANG, HANCE, Ioana R, WEIDMAN, Janice F, BERRY, Kristi J, PLAUT, Roger D, WOLF, Alex M, WATLKINS, Kisha L, NIERMAN, William C, PAULSEN, Ian T, HAZEN, Alyson, CLINE, Robin, REDMOND, Caroline, THWAITE, Joanne E, WHITE, Owen, SALZBERG, Steven L, THOMASON, Brendan, FRIEDLANDER, Arthur M, KOEHLER, Theresa M, HANNA, Philip C, NELSON, Karen E, KOLSTØ, Anne-Brit, FRASER, Claire M, TETTELIN, Herve, FOUTS, Derrick E, EISEN, Jonathan A, GILL, Steven R

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