Search Results - "Quadrini, Michela"
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Structural relation matching: an algorithm to identify structural patterns into RNAs and their interactions
Published in Journal of integrative bioinformatics (31-05-2021)“…RNA molecules play crucial roles in various biological processes. Their three-dimensional configurations determine the functions and, in turn, influences the…”
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Automatic generation of pseudoknotted RNAs taxonomy
Published in BMC bioinformatics (15-06-2023)“…The ability to compare RNA secondary structures is important in understanding their biological function and for grouping similar organisms into families by…”
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3
Hierarchical representation for PPI sites prediction
Published in BMC bioinformatics (20-03-2022)“…Protein-protein interactions have pivotal roles in life processes, and aberrant interactions are associated with various disorders. Interaction site…”
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4
An algebraic language for RNA pseudoknots comparison
Published in BMC bioinformatics (18-04-2019)“…RNA secondary structure comparison is a fundamental task for several studies, among which are RNA structure prediction and evolution. The comparison can…”
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A Spatial Logic for Simplicial Models
Published in Logical methods in computer science (01-01-2023)“…Collective Adaptive Systems often consist of many heterogeneous components typically organised in groups. These entities interact with each other by adapting…”
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Exploiting the Role of Features for Antigens-Antibodies Interaction Site Prediction
Published in Methods in molecular biology (Clifton, N.J.) (2024)“…Antibodies are a class of proteins that recognize and neutralize pathogens by binding to their antigens. They are the most significant category of…”
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7
ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots
Published in Bioinformatics (01-06-2020)“…Abstract Summary Current methods for comparing RNA secondary structures are based on tree representations and exploit edit distance or alignment algorithms…”
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libmg: A Python library for programming graph neural networks in μG
Published in Science of computer programming (01-12-2024)“…Graph neural networks have proven their effectiveness across a wide spectrum of graph-based tasks. Despite their successes, they share the same limitations as…”
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Stress detection with encoding physiological signals and convolutional neural network
Published in Machine learning (01-08-2024)“…Stress is a significant and growing phenomenon in the modern world that leads to numerous health problems. Robust and non-invasive method developments for…”
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Sibilla: A tool for reasoning about collective systems
Published in Science of computer programming (01-07-2024)“…Formal approaches and tools have been defined, implemented and successfully applied to support the design and development of Collective Adaptive Systems. These…”
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A Spatial Logic for Simplicial Models
Published 25-07-2023“…Logical Methods in Computer Science, Volume 19, Issue 3 (July 26, 2023) lmcs:8576 Collective Adaptive Systems often consist of many heterogeneous components…”
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The $\mu\mathcal{G}$ Language for Programming Graph Neural Networks
Published 12-07-2024“…Graph neural networks form a class of deep learning architectures specifically designed to work with graph-structured data. As such, they share the inherent…”
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