Search Results - "Qi, Yifei"

Roles of PLODs in Collagen Synthesis and Cancer Progression by Qi, Yifei, Xu, Ren

“…Collagen is the major component of extracellular matrix. Collagen cross-link and deposition depend on lysyl hydroxylation, which is catalyzed by…”
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Effects of N-glycosylation on protein conformation and dynamics: Protein Data Bank analysis and molecular dynamics simulation study by Lee, Hui Sun, Qi, Yifei, Im, Wonpil

“…N -linked glycosylation is one of the most important, chemically complex and ubiquitous post-translational modifications in all eukaryotes. The N -glycans that…”
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Discovery of novel allosteric effectors based on the predicted allosteric sites for Escherichia coli D-3-phosphoglycerate dehydrogenase by Wang, Qian, Qi, Yifei, Yin, Ning, Lai, Luhua

“…D-3-phosphoglycerate dehydrogenase (PGDH) from Escherichia coli catalyzes the first critical step in serine biosynthesis, and can be allosterically inhibited…”
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DeepDDG: Predicting the Stability Change of Protein Point Mutations Using Neural Networks by Cao, Huali, Wang, Jingxue, He, Liping, Qi, Yifei, Zhang, John Z

“…Accurately predicting changes in protein stability due to mutations is important for protein engineering and for understanding the functional consequences of…”
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DoS Attack Energy Management Against Remote State Estimation by Zhang, Heng, Qi, Yifei, Wu, Junfeng, Fu, Lingkun, He, Lidong

“…This paper considers a remote state estimation problem, where a sensor measures the state of a linear discrete-time process and has computational capability to…”
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CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field by Lee, Jumin, Cheng, Xi, Swails, Jason M, Yeom, Min Sun, Eastman, Peter K, Lemkul, Justin A, Wei, Shuai, Buckner, Joshua, Jeong, Jong Cheol, Qi, Yifei, Jo, Sunhwan, Pande, Vijay S, Case, David A, Brooks, Charles L, MacKerell, Alexander D, Klauda, Jeffery B, Im, Wonpil

“…Proper treatment of nonbonded interactions is essential for the accuracy of molecular dynamics (MD) simulations, especially in studies of lipid bilayers. The…”
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Optimal Sensor Data Scheduling for Remote Estimation Over a Time-Varying Channel by Qi, Yifei, Cheng, Peng, Chen, Jiming

“…We consider sensor data scheduling with communication energy constraint for remote state estimation over a time-varying fading channel. Given that the fade…”
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CHARMM‐GUI 10 years for biomolecular modeling and simulation by Jo, Sunhwan, Cheng, Xi, Lee, Jumin, Kim, Seonghoon, Park, Sang‐Jun, Patel, Dhilon S., Beaven, Andrew H., Lee, Kyu Il, Rui, Huan, Park, Soohyung, Lee, Hui Sun, Roux, Benoît, MacKerell, Alexander D., Klauda, Jeffrey B., Qi, Yifei, Im, Wonpil

“…CHARMM‐GUI, http://www.charmm-gui.org, is a web‐based graphical user interface that prepares complex biomolecular systems for molecular simulations. CHARMM‐GUI…”
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HobPre: accurate prediction of human oral bioavailability for small molecules by Wei, Min, Zhang, Xudong, Pan, Xiaolin, Wang, Bo, Ji, Changge, Qi, Yifei, Zhang, John Z. H.

“…Human oral bioavailability (HOB) is a key factor in determining the fate of new drugs in clinical trials. HOB is conventionally measured using expensive and…”
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Peridroplet mitochondria are associated with the severity of MASLD and the prevention of MASLD by diethyldithiocarbamate by Sun, Xiangyun, Yu, Qinghong, Qi, Yifei, Kang, Bilian, Zhao, Xinyan, Liu, Lin, Wang, Ping, Cong, Min, Liu, Tianhui

“…Mitochondria can contact lipid droplets (LDs) to form peridroplet mitochondria (PDM) which trap fatty acids in LDs by providing ATP for triglyceride synthesis…”
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Energy-Efficient Data Forwarding for State Estimation in Multi-Hop Wireless Sensor Networks by Cheng, Peng, Qi, Yifei, Xin, Kefei, Chen, Jiming, Xie, Lihua

“…State estimation is of great importance in various applications based on wireless networked control systems. Wireless sensor node usually forwards its data to…”
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Membrane associated collagen XIII promotes cancer metastasis and enhances anoikis resistance by Zhang, Hui, Fredericks, Tricia, Xiong, Gaofeng, Qi, Yifei, Rychahou, Piotr G, Li, Jia-Da, Pihlajaniemi, Taina, Xu, Wei, Xu, Ren

“…Increased collagen expression and deposition are associated with cancer progression and poor prognosis in breast cancer patients. However, function and…”
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CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues by Jo, Sunhwan, Cheng, Xi, Islam, Shahidul M, Huang, Lei, Rui, Huan, Zhu, Allen, Lee, Hui Sun, Qi, Yifei, Han, Wei, Vanommeslaeghe, Kenno, MacKerell, Jr, Alexander D, Roux, Benoît, Im, Wonpil

“…CHARMM-GUI, http://www.charmm-gui.org, is a web-based graphical user interface to prepare molecular simulation systems and input files to facilitate the usage…”
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Dynamics and Interactions of OmpF and LPS: Influence on Pore Accessibility and Ion Permeability by Patel, Dhilon S., Re, Suyong, Wu, Emilia L., Qi, Yifei, Klebba, Phillip E., Widmalm, Göran, Yeom, Min Sun, Sugita, Yuji, Im, Wonpil

“…The asymmetric outer membrane of Gram-negative bacteria is formed of the inner leaflet with phospholipids and the outer leaflet with lipopolysaccharides (LPS)…”
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Effects and mechanisms of Zhizi Chuanxiong herb pair against atherosclerosis: an integration of network pharmacology, molecular docking, and experimental validation by Zhang, Yan, Qi, Yifei, Jia, Zijun, Li, Yiming, Wu, Liqi, Zhou, Qingbing, Xu, Fengqin

“…The Zhizi Chuanxiong herb pair (ZCHP) can delay pathological progression of atherosclerosis (AS); however, its pharmacological mechanism remains unclear…”
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Common ground on immune infiltration landscape and diagnostic biomarkers in diabetes-complicated atherosclerosis: an integrated bioinformatics analysis by Qi, Yifei, Zhang, Yan, Guan, Shuang, Liu, Li, Wang, Hongqin, Chen, Yao, Zhou, Qingbing, Xu, Fengqin, Zhang, Ying

“…Type 2 diabetes mellitus (T2DM) is a major cause of atherosclerosis (AS). However, definitive evidence regarding the common molecular mechanisms underlying…”
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Energy-Efficient Target Tracking by Mobile Sensors With Limited Sensing Range by Yifei Qi, Peng Cheng, Jing Bai, Jiming Chen, Guenard, Adrien, Ye-Qiong Song, Zhiguo Shi

“…The recent advancements of technology in robotics and wireless communication have enabled the low-cost and large-scale deployment of mobile sensor nodes for…”
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Binding Modes of Small‐Molecule Inhibitors to the EED Pocket of PRC2 by Huang, Dading, Tian, Shuaizhen, Qi, Yifei, Zhang, John Z. H.

“…Polycomb Polycomb repressive complex 2 (PRC2) plays a key role in silencing epigenetic gene through trimethylation of lysine 27 on histone 3 (H3K27)…”
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Electrically Tunable All-Dielectric Metasurfaces Integrated With Nematic Liquid Crystals for Information Encryption by Shen, Chuan, Sun, Jiali, Qi, Yifei, Lv, Shiqi, Wei, Sui

“…As artificially designed two-dimensional (2D) arrays of subwavelength nanostructures, metasurfaces provide a new avenuefor the design of static planar optics…”
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Replica symmetry breaking in 1D Rayleigh scattering system: theory and validations by Qi, Yifei, Ni, Longqun, Ye, Zhenyu, Zhang, Jiaojiao, Bao, Xingyu, Wang, Pan, Rao, Yunjiang, Raposo, Ernesto P., Gomes, Anderson S. L., Wang, Zinan

“…Spin glass theory, as a paradigm for describing disordered magnetic systems, constitutes a prominent subject of study within statistical physics. Replica…”
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