Search Results - "Proutski, Vitali"

Hydroxymethylation profile of cell-free DNA is a biomarker for early colorectal cancer by Walker, Nicolas J., Rashid, Mamunur, Yu, Shirong, Bignell, Helen, Lumby, Casper K., Livi, Carmen M., Howell, Kate, Morley, David J., Morganella, Sandro, Barrell, Daniel, Caim, Shabhonam, Gosal, Walraj, Füllgrabe, Jens, Charlesworth, Thomas J., Vasquez, Louella, Ahdesmäki, Miika, Eizenga, Jordan, Prabhat, Parul, Proutski, Vitali, Murat-Onana, Marie Laurie, Greenwood, Catherine J., Kirkwood, Lisa, Maisuria-Armer, Meeta, Li, Mengjie, Coats, Emma, Winfield, Victoria, MacBean, Lachlan, Stock, Toby, Tomé-Fernandez, Alice, Chan, Yat, Sheikh, Nasir, Golder, Paula, Steward, Michael, Ost, Tobias W. B., Stewart, Douglas, Vilella, Albert, Noursalehi, Mojtaba, Paten, Benedict, Lucarelli, Debora, Mason, Joanne, Ridge, Gareth, Mellad, Jason, Shirodkar, Suman, Balasubaramanian, Shankar, Holbrook, Joanna D.

“…Early detection of cancer will improve survival rates. The blood biomarker 5-hydroxymethylcytosine has been shown to discriminate cancer. In a large…”
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Abstract B015: Duodenal aspiration biopsy in diagnosis of pancreatic neoplasms by Kashintsev, Aleksei, Proutski, Vitali

“…Abstract Introduction Intraductal papillary mucinous neoplasms (IPMNs) are a subset of lesions with elevated malignant potential, warranting their inclusion in…”
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Implications for Powering Biomarker Discovery Studies by Dibben, Sian M, Holt, Robert J, Davison, Timothy S, Wilson, Claire L, Taylor, Janet, Paul, Ian, McManus, Kieran, Kelly, Paul J, Proutski, Vitali, Harkin, D. Paul, Kerr, Peter, Fennell, Dean A, James, Jacqueline A, Kennedy, Richard D

“…This study examined variations in gene expression between FFPE blocks within tumors of individual patients. Microarray data were used to measure tumor…”
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The colorectal cancer disease-specific transcriptome may facilitate the discovery of more biologically and clinically relevant information by Allen, Wendy L, Jithesh, Puthen V, Oliver, Gavin R, Proutski, Irina, Longley, Daniel B, Lenz, Heinz-Josef, Proutski, Vitali, Harkin, Paul, Johnston, Patrick G

“…To date, there are no clinically reliable predictive markers of response to the current treatment regimens for advanced colorectal cancer. The aim of the…”
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Generation of a non-small cell lung cancer transcriptome microarray by Tanney, Austin, Oliver, Gavin R, Farztdinov, Vadim, Kennedy, Richard D, Mulligan, Jude M, Fulton, Ciaran E, Farragher, Susan M, Field, John K, Johnston, Patrick G, Harkin, D Paul, Proutski, Vitali, Mulligan, Karl A

“…Non-small cell lung cancer (NSCLC) is the leading cause of cancer mortality worldwide. At present no reliable biomarkers are available to guide the management…”
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GeneChip analysis of hippocampal gene expression profiles of short- and long-attack-latency mice: Technical and biological implications by Feldker, Dorine E.M., Datson, Nicole A., Veenema, Alexa H., Proutski, Vitali, Lathouwers, Desiree, de Kloet, E. Ron, Vreugdenhil, Erno

“…To gain insight into the molecular mechanisms underlying the behavioral differences between two mouse lines genetically selected for long and short attack…”
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Primer Master: a new program for the design and analysis of PCR primers by Proutski, Vitali, Holmes, Edward C.

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Early selective enteral feeding in treatment of acute pancreatitis: A case report by Kashintsev, Aleksei A, Anisimov, Sergey V, Nadeeva, Anastasya, Proutski, Vitali

“…Early initiation of enteral feeding is recognized to play a crucial role in improving the outcomes of treatment of acute pancreatitis. However, the method of…”
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Identification and Validation of an Anthracycline/ Cyclophosphamide-Based Chemotherapy Response Assay in Breast Cancer by MULLIGAN, Jude M, HILL, Laura A, QUINN, Jennifer E, LINDOR, Noralane M, MULLAN, Paul B, JAMES, Colin R, WALKER, Steven M, KERR, Peter, JAMES, Jacqueline, DAVISON, Timothy S, PROUTSKI, Vitali, SALTO-TELLEZ, Manuel, DEHARO, Steve, JOHNSTON, Patrick G, COUCH, Fergus J, HARKIN, D. Paul, KENNEDY, Richard D, IRWIN, Gareth, BOYLE, David, KEATING, Katherine E, RAJI, Olaide Y, MCDYER, Fionnuala A, O'BRIEN, Eamonn, BYLESJO, Max

“…There is no method routinely used to predict response to anthracycline and cyclophosphamide-based chemotherapy in the clinic; therefore patients often receive…”
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Prognostic and Predictive Biomarkers in Resected Colon Cancer: Current Status and Future Perspectives for Integrating Genomics into Biomarker Discovery by Tejpar, Sabine, Bertagnolli, Monica, Bosman, Fred, Lenz, Heinz‐Joseph, Garraway, Levi, Waldman, Frederic, Warren, Robert, Bild, Andrea, Collins‐Brennan, Denise, Hahn, Hejin, Harkin, D. Paul, Kennedy, Richard, Ilyas, Mohammad, Morreau, Hans, Proutski, Vitali, Swanton, Charles, Tomlinson, Ian, Delorenzi, Mauro, Fiocca, Roberto, Van Cutsem, Eric, Roth, Arnaud

“…The number of agents that are potentially effective in the adjuvant treatment of locally advanced resectable colon cancer is increasing. Consequently, it is…”
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Development and Independent Validation of a Prognostic Assay for Stage II Colon Cancer Using Formalin-Fixed Paraffin-Embedded Tissue by KENNEDY, Richard D, BYLESJO, Max, GOFFARD, Nicolas, HEY, Peter, MCDYER, Fionnuala, MULLIGAN, Karl, MUSSEN, Julie, O'BRIEN, Eamonn, OLIVER, Gavin, WALKER, Steven M, MULLIGAN, Jude M, WILSON, Claire, KERR, Peter, WINTER, Andreas, O'DONOGHUE, Diarmuid, MULCAHY, Hugh, O'SULLIVAN, Jacintha, SHEAHAN, Kieran, HYLAND, John, DHIR, Rajiv, BATHE, Oliver F, WINQVIST, Ola, MANNE, Upender, DAVISON, Timothy, SHANMUGAM, Chandrakumar, RAMASWAMY, Sridhar, LEON, Eduardo J, SMITH, William I, MCDERMOTT, Ultan, WILSON, Richard H, LONGLEY, Daniel, MARSHALL, John, CUMMINS, Robert, SARGENT, Daniel J, BLACK, Julie M, JOHNSTON, Patrick G, PAUL HARKIN, D, KAY, Elaine W, HOLT, Robert J, PROUTSKI, Vitali, AHDESMAKI, Miika, FARZTDINOV, Vadim

“…Current prognostic factors are poor at identifying patients at risk of disease recurrence after surgery for stage II colon cancer. Here we describe a DNA…”
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Hemostasis of massive bleeding from esophageal tumor: A case report by Kashintsev, Aleksei A, Rusanov, Dmitriy S, Antipova, Mariya V, Anisimov, Sergey V, Granstrem, Oleg K, Kokhanenko, Nikolai Yu, Medvedev, Konstantin V, Kutumov, Eldar B, Nadeeva, Anastasya A, Proutski, Vitali

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Abstract 326: Investigation of molecular subtypes within FFPE breast cancer tumors using the Breast Cancer DSA by Deharo, Steve, Mulligan, Jude M., McDyer, Fionnuala A., Bylesjo, Max, Halfpenny, Iris, Delaney, Thomas, Quinn, Jennifer E., Couch, Fergus J., Proutski, Vitali, Harkin, Paul D., Kennedy, Richard D.

“…Abstract Microarray gene expression profiling has facilitated identification of molecular subtypes which can be associated with disease outcome and treatment…”
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Model selection for prognostic time-to-event gene signature discovery with applications in early breast cancer data by Ahdesmäki, Miika, Lancashire, Lee, Proutski, Vitali, Wilson, Claire, Davison, Timothy S, Harkin, D Paul, Kennedy, Richard D

“…Model selection between competing models is a key consideration in the discovery of prognostic multigene signatures. The use of appropriate statistical…”
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Secondary Structure of the 3′ Untranslated Region of Flaviviruses: Similarities and Differences by Proutski, Vitali, Gould, Ernest A., Holmes, Edward C.

“…Genetic algorithm-based RNA secondary structure prediction was used in combination with comparative sequence analysis to construct models of folding for the…”
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The effect of chronic exposure to highly aggressive mice on hippocampal gene expression of non-aggressive subordinates by Feldker, Dorine E.M., Morsink, Maarten C., Veenema, Alexa H., Datson, Nicole A., Proutski, Vitali, Lathouwers, Desiree, de Kloet, E. Ronald, Vreugdenhil, Erno

“…Exposure to a chronic psychosocial stressor changes the behavioral and neuroendocrine response pattern and causes structural changes in the rodent hippocampus…”
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Early selective enteral feeding in treatment of acute pancreatitis: A case report by Kashintsev, Aleksei A, Anisimov, Sergey V, Nadeeva, Anastasya, Proutski, Vitali

“…BACKGROUNDEarly initiation of enteral feeding is recognized to play a crucial role in improving the outcomes of treatment of acute pancreatitis. However, the…”
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Biological consequences of deletions within the 3′-untranslated region of flaviviruses may be due to rearrangements of RNA secondary structure by Proutski, Vitali, Gritsun, Tamara S., Gould, Ernest A., Holmes, Edward C.

“…It was previously reported that deletions introduced into the 3′-untranslated region (3′-UTR) of dengue type 4 (DEN 4) virus (Men, R., Bray, M., Clark, D.,…”
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Secondary structure of the 3'-untranslated region of yellow fever virus: implications for virulence, attenuation and vaccine development by Proutski, V, Gaunt, MW, Gould, EA, Holmes, EC

“…V Proutski, MW Gaunt, EA Gould and EC Holmes Wellcome Trust Centre for the Epidemiology of Infectious Disease, Department of Zoology, University of Oxford, UK…”
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SWAN: sliding window analysis of nucleotide sequence variability by Proutski, V. The Wellcome Trust Centre for the Epidemiology of Infectious Disease, Oxford, UK, Holmes, E.C

“…This paper describes a new program which reveals, analyses and graphically represents patterns of variability along nucleotide sequences. The program, 'SWAN',…”
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