Search Results - "Prosperi, C"

QuRe: software for viral quasispecies reconstruction from next-generation sequencing data by Prosperi, Mattia C. F., Salemi, Marco

“…Next-generation sequencing (NGS) is an ideal framework for the characterization of highly variable pathogens, with a deep resolution able to capture minority…”
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Emergence of recombinant Mayaro virus strains from the Amazon basin by Mavian, Carla, Rife, Brittany D., Dollar, James Jarad, Cella, Eleonora, Ciccozzi, Massimo, Prosperi, Mattia C. F., Lednicky, John, Morris, J. Glenn, Capua, Ilaria, Salemi, Marco

“…Mayaro virus (MAYV), causative agent of Mayaro Fever, is an arbovirus transmitted by Haemagogus mosquitoes. Despite recent attention due to the identification…”
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Evolution pathways of IgE responses to grass and mite allergens throughout childhood by Custovic, Adnan, MD, PhD, Sonntag, Hans-Joachim, MRes, Buchan, Iain E., MD, PhD, Belgrave, Danielle, PhD, Simpson, Angela, MD, PhD, Prosperi, Mattia C.F., PhD

“…Background Little is known about longitudinal patterns of the development of IgE to distinct allergen components. Objective We sought to investigate the…”
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Predictors of first-line antiretroviral therapy discontinuation due to drug-related adverse events in HIV-infected patients: a retrospective cohort study by Prosperi, Mattia C F, Fabbiani, Massimiliano, Fanti, Iuri, Zaccarelli, Mauro, Colafigli, Manuela, Mondi, Annalisa, D'Avino, Alessandro, Borghetti, Alberto, Cauda, Roberto, Di Giambenedetto, Simona

“…Drug-related toxicity has been one of the main causes of antiretroviral treatment discontinuation. However, its determinants are not fully understood. Aim of…”
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Challenges in interpreting allergen microarrays in relation to clinical symptoms: A machine learning approach by Prosperi, Mattia C. F., Belgrave, Danielle, Buchan, Iain, Simpson, Angela, Custovic, Adnan

“…Background Identifying different patterns of allergens and understanding their predictive ability in relation to asthma and other allergic diseases is crucial…”
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Added value of the measles-rubella supplementary immunization activity in reaching unvaccinated and under-vaccinated children, a cross-sectional study in five Indian districts, 2018–20 by Prosperi, C., Thangaraj, J.W.V., Hasan, A.Z., Kumar, M.S., Truelove, S., Kumar, V.S., Winter, A.K., Bansal, A.K., Chauhan, S.L., Grover, G.S., Jain, A.K., Kulkarni, R.N., Sharma, S.K., Soman, B., Chaaithanya, I.K., Kharwal, S., Mishra, S.K., Salvi, N.R., Sharma, N.P., Sharma, S., Varghese, A., Sabarinathan, R., Duraiswamy, A., Rani, D.S., Kanagasabai, K., Lachyan, A., Gawali, P., Kapoor, M., Chonker, S.K., Cutts, F.T., Sangal, L., Mehendale, S.M., Sapkal, G.N., Gupta, N., Hayford, K., Moss, W.J., Murhekar, M.V.

“…Supplementary immunization activities (SIAs) aim to interrupt measles transmission by reaching susceptible children, including children who have not received…”
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Challenges in Identifying Asthma Subgroups Using Unsupervised Statistical Learning Techniques by PROSPERI, Mattia C. F, SAHINER, Umit M, BELGRAVE, Danielle, SACKESEN, Cansin, BUCHAN, Iain E, SIMPSON, Angela, YAVUZ, Tolga S, KALAYCI, Omer, CUSTOVIC, Adnan

“…Unsupervised statistical learning techniques, such as exploratory factor analysis (EFA) and hierarchical clustering (HC), have been used to identify asthma…”
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Declining Prevalence of HIV-1 Drug Resistance in Antiretroviral Treatment-exposed Individuals in Western Europe by De Luca, Andrea, Dunn, David, Zazzi, Maurizio, Camacho, Ricardo, Torti, Carlo, Fanti, Iuri, Kaiser, Rolf, Sönnerborg, Anders, Codoñer, Francisco M., Van Laethem, Kristel, Vandamme, Anne-Mieke, Bansi, Loveleen, Ghisetti, Valeria, van de Vijver, David A. M. C., Asboe, David, Prosperi, Mattia C. F., Di Giambenedetto, Simona

“…HIV-1 drug resistance represents a major obstacle to infection and disease control. This retrospective study analyzes trends and determinants of resistance in…”
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Planning for low carbon cities: Reflection on the case of Broward County, Florida, USA by Feliciano, Maribel, Prosperi, David C.

“…► Planning-related GHG reduction policies constrained by reliance on a planning system which excludes innovation possibilities. ► Low carbon city planning…”
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Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing by Prosperi, Mattia C F, Prosperi, Luciano, Bruselles, Alessandro, Abbate, Isabella, Rozera, Gabriella, Vincenti, Donatella, Solmone, Maria Carmela, Capobianchi, Maria Rosaria, Ulivi, Giovanni

“…Next-generation sequencing (NGS) offers a unique opportunity for high-throughput genomics and has potential to replace Sanger sequencing in many fields,…”
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Molecular Epidemiology of HIV-1 Subtype B Infection across Florida Reveals Few Large Superclusters with Metropolitan Origin by Rich, Shannan N, Prosperi, Mattia C F, Dellicour, Simon, Vrancken, Bram, Cook, Robert L, Spencer, Emma C, Salemi, Marco, Mavian, Carla

“…Florida is considered an epicenter of HIV in the United States. The U.S. federal plan for Ending the HIV Epidemic (EHE) within 10 years prioritizes seven of…”
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Empirical validation of viral quasispecies assembly algorithms: state-of-the-art and challenges by Prosperi, Mattia C. F., Yin, Li, Nolan, David J., Lowe, Amanda D., Goodenow, Maureen M., Salemi, Marco

“…Next generation sequencing (NGS) is superseding Sanger technology for analysing intra-host viral populations, in terms of genome length and resolution. We…”
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Combination of Immune and Viral Factors Distinguishes Low-Risk versus High-Risk HIV-1 Disease Progression in HLA-B5701 Subjects by Norström, Melissa M, Buggert, Marcus, Tauriainen, Johanna, Hartogensis, Wendy, Prosperi, Mattia C, Wallet, Mark A, Hecht, Frederick M, Salemi, Marco, Karlsson, Annika C

“…Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Comparative determination of HIV-1 co-receptor tropism by Enhanced Sensitivity Trofile, gp120 V3-loop RNA and DNA genotyping by Prosperi, Mattia C F, Bracciale, Laura, Fabbiani, Massimiliano, Di Giambenedetto, Simona, Razzolini, Francesca, Meini, Genny, Colafigli, Manuela, Marzocchetti, Angela, Cauda, Roberto, Zazzi, Maurizio, De Luca, Andrea

“…Trofile is the prospectively validated HIV-1 tropism assay. Its use is limited by high costs, long turn-around time, and inability to test patients with very…”
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Incidence of Malignancies in HIV-Infected Patients and Prognostic Role of Current CD4 Cell Count: Evidence from a Large Italian Cohort Study by Prosperi, M. C. F., Cozzi-Lepri, A., Castagna, A., Mussini, C., Murri, R., Giacometti, A., Torti, C., Costantini, A., Narciso, P., Ghinelli, F., Antinori, A., Monforte, A. d'Arminio

“…The incidence of and predictors of acquired immunodeficiency syndrome-defining malignancies (ADMs) and non-ADM (NADMs) were evaluated in a large Italian…”
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Antiretroviral therapy optimisation without genotype resistance testing: a perspective on treatment history based models by Prosperi, Mattia C F, Rosen-Zvi, Michal, Altmann, André, Zazzi, Maurizio, Di Giambenedetto, Simona, Kaiser, Rolf, Schülter, Eugen, Struck, Daniel, Sloot, Peter, van de Vijver, David A, Vandamme, Anne-Mieke, Sönnerborg, Anders

“…Although genotypic resistance testing (GRT) is recommended to guide combination antiretroviral therapy (cART), funding and/or facilities to perform GRT may not…”
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Milk fermented with a 15-lipoxygenase-1-producing Lactococcus lactis alleviates symptoms of colitis in a murine model by Saraiva, Tessalia D L, Morais, Katia, Pereira, Vanessa B, de Azevedo, Marcela, Rocha, Clarissa S, Prosperi, Camila C, Gomes-Santos, Ana C, Bermudez-Humaran, Luis, Faria, Ana M C, Blottiere, Herve M, Langella, Philippe, Miyoshi, Anderson, de LeBlanc, Alejandra de Moreno, LeBlanc, Jean G, Azevedo, Vasco

“…Inflammatory bowel diseases (IBD), such as Crohn's disease and ulcerative colitis, is characterized by extensive inflammation due to dysregulation of the…”
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The threshold bootstrap clustering: a new approach to find families or transmission clusters within molecular quasispecies by Prosperi, Mattia C F, De Luca, Andrea, Di Giambenedetto, Simona, Bracciale, Laura, Fabbiani, Massimiliano, Cauda, Roberto, Salemi, Marco

“…Phylogenetic methods produce hierarchies of molecular species, inferring knowledge about taxonomy and evolution. However, there is not yet a consensus…”
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Computer-Aided Optimization of Combined Anti-Retroviral Therapy for HIV: New Drugs, New Drug Targets and Drug Resistance by Zazzi, Maurizio, Cozzi-Lepri, Alessandro, Prosperi, Mattia C F

“…Resistance to antiretroviral drugs is a complex and evolving area with relevant implications in the treatment of human immunodeficiency virus (HIV) infection…”
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Effects of probiotic Lactobacillus salivarius W24 on the compositional stability of oral microbial communities by Pham, Lien Chi, van Spanning, Rob J.M, Röling, Wilfred F.M, Prosperi, Anja C, Terefework, Zewdu, ten Cate, Jacob M, Crielaard, Wim, Zaura, Egija

“…Abstract Probiotics are microorganisms beneficial to gastrointestinal health. Although some strains are also known to possess positive effects on oral health,…”
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