Search Results - "Prasad, Arjun B"

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence by Feldgarden, Michael, Brover, Vyacheslav, Gonzalez-Escalona, Narjol, Frye, Jonathan G., Haendiges, Julie, Haft, Daniel H., Hoffmann, Maria, Pettengill, James B., Prasad, Arjun B., Tillman, Glenn E., Tyson, Gregory H., Klimke, William

“…Antimicrobial resistance (AMR) is a significant public health threat. With the rise of affordable whole genome sequencing, in silico approaches to assessing…”
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Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates by Feldgarden, Michael, Brover, Vyacheslav, Haft, Daniel H, Prasad, Arjun B, Slotta, Douglas J, Tolstoy, Igor, Tyson, Gregory H, Zhao, Shaohua, Hsu, Chih-Hao, McDermott, Patrick F, Tadesse, Daniel A, Morales, Cesar, Simmons, Mustafa, Tillman, Glenn, Wasilenko, Jamie, Folster, Jason P, Klimke, William

“…Antimicrobial resistance (AMR) is a major public health problem that requires publicly available tools for rapid analysis. To identify AMR genes in…”
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Database resources of the National Center for Biotechnology Information by Sayers, Eric W, Beck, Jeff, Bolton, Evan E, Brister, J Rodney, Chan, Jessica, Comeau, Donald C, Connor, Ryan, DiCuccio, Michael, Farrell, Catherine M, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hatcher, Eneida, Hoeppner, Marilu, Kane, Megan, Kannan, Sivakumar, Katz, Kenneth S, Kelly, Christopher, Klimke, William, Kim, Sunghwan, Kimchi, Avi, Landrum, Melissa, Lathrop, Stacy, Lu, Zhiyong, Malheiro, Adriana, Marchler-Bauer, Aron, Murphy, Terence D, Phan, Lon, Prasad, Arjun B, Pujar, Shashikant, Sawyer, Amanda, Schmieder, Erin, Schneider, Valerie A, Schoch, Conrad L, Sharma, Shobha, Thibaud-Nissen, Françoise, Trawick, Barton W, Venkatapathi, Thilakam, Wang, Jiyao, Pruitt, Kim D, Sherry, Stephen T

“…The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence…”
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Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Data Sets by Prasad, Arjun B., Allard, Marc W., Green, Eric D.

“…The ongoing generation of prodigious amounts of genomic sequence data from myriad vertebrates is providing unparalleled opportunities for establishing…”
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Curation of the AMRFinderPlus databases: applications, functionality and impact by Feldgarden, Michael, Brover, Vyacheslav, Fedorov, Boris, Haft, Daniel H, Prasad, Arjun B, Klimke, William

“…Antimicrobial resistance (AMR) is a significant public health threat. Low-cost whole-genome sequencing, which is often used in surveillance programmes,…”
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Erratum for Feldgarden et al., "Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates" by Feldgarden, Michael, Brover, Vyacheslav, Haft, Daniel H, Prasad, Arjun B, Slotta, Douglas J, Tolstoy, Igor, Tyson, Gregory H, Zhao, Shaohua, Hsu, Chih-Hao, McDermott, Patrick F, Tadesse, Daniel A, Morales, Cesar, Simmons, Mustafa, Tillman, Glenn, Wasilenko, Jamie, Folster, Jason P, Klimke, William

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Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation by Gopinath, Chetna, Law, William D, Rodríguez-Molina, José F, Prasad, Arjun B, Song, Lingyun, Crawford, Gregory E, Mullikin, James C, Svaren, John, Antonellis, Anthony

“…The transcription factor SOX10 is essential for all stages of Schwann cell development including myelination. SOX10 cooperates with other transcription factors…”
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A scalable and flexible approach for investigating the genomic landscapes of phylogenetic incongruence by Prasad, Arjun B., Mullikin, James C., Green, Eric D.

“…[Display omitted] ► PartFinder identifies the patterns of change in tree support across genomic sequence. ► Regions supporting the species tree have higher…”
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Deletion of long-range sequences at Sox10 compromises developmental expression in a mouse model of Waardenburg–Shah (WS4) syndrome by Antonellis, Anthony, Bennett, William R., Menheniott, Trevelyan R., Prasad, Arjun B., Lee-Lin, Shih-Queen, Green, Eric D., Paisley, Derek, Kelsh, Robert N., Pavan, William J., Ward, Andrew

“…The transcription factor SOX10 is mutated in the human neurocristopathy Waardenburg–Shah syndrome (WS4), which is characterized by enteric aganglionosis and…”
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Parallel construction of orthologous sequence-ready clone contig maps in multiple species by Thomas, James W, Prasad, Arjun B, Summers, Tyrone J, Lee-Lin, Shih-Queen, Maduro, Valerie V B, Idol, Jacquelyn R, Ryan, Joseph F, Thomas, Pamela J, McDowell, Jennifer C, Green, Eric D

“…Comparison is a fundamental tool for analyzing DNA sequence. Interspecies sequence comparison is particularly powerful for inferring genome function and is…”
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Detection of potential GDF6 regulatory elements by multispecies sequence comparisons and identification of a skeletal joint enhancer by Portnoy, Matthew E., McDermott, Kelly J., Antonellis, Anthony, Margulies, Elliott H., Prasad, Arjun B., Kingsley, David M., Green, Eric D., Mortlock, Douglas P.

“…The identification of noncoding functional elements within vertebrate genomes, such as those that regulate gene expression, is a major challenge. Comparisons…”
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Analyzing comparative sequence data to understand genome function and evolution by Prasad, Arjun B

“…The ever-accelerating production of genome sequence from numerous species is providing new opportunities to examine evolution and evolutionary processes. My…”
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