Search Results - "Pradines, Joël R."

Multiomic study of skin, peripheral blood, and serum: is serum proteome a reflection of disease process at the end-organ level in systemic sclerosis? by Farutin, Victor, Kurtagic, Elma, Pradines, Joël R, Capila, Ishan, Mayes, Maureen D, Wu, Minghua, Manning, Anthony M, Assassi, Shervin

“…Serum proteins can be readily assessed during routine clinical care. However, it is unclear to what extent serum proteins reflect the molecular dysregulations…”
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Enhancing reproducibility of gene expression analysis with known protein functional relationships: The concept of well-associated protein by Pradines, Joël R, Farutin, Victor, Cilfone, Nicholas A, Ghavami, Abouzar, Kurtagic, Elma, Guess, Jamey, Manning, Anthony M, Capila, Ishan

“…Identification of differentially expressed genes (DEGs) is well recognized to be variable across independent replications of genome-wide transcriptional…”
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Combining measurements to estimate properties and characterization extent of complex biochemical mixtures; applications to Heparan Sulfate by Pradines, Joël R., Beccati, Daniela, Lech, Miroslaw, Ozug, Jennifer, Farutin, Victor, Huang, Yongqing, Gunay, Nur Sibel, Capila, Ishan

“…Complex mixtures of molecular species, such as glycoproteins and glycosaminoglycans, have important biological and therapeutic functions. Characterization of…”
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An integrated approach using orthogonal analytical techniques to characterize heparan sulfate structure by Beccati, Daniela, Lech, Miroslaw, Ozug, Jennifer, Gunay, Nur Sibel, Wang, Jing, Sun, Elaine Y., Pradines, Joël R, Farutin, Victor, Shriver, Zachary, Kaundinya, Ganesh V., Capila, Ishan

“…Heparan sulfate (HS), a glycosaminoglycan present on the surface of cells, has been postulated to have important roles in driving both normal and pathological…”
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Analyzing protein lists with large networks: edge-count probabilities in random graphs with given expected degrees by Pradines, Joël R, Farutin, Victor, Rowley, Steve, Dancík, Vlado

“…We present an analytical framework to analyze lists of proteins with large undirected graphs representing their known functional relationships. We consider…”
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Complex ligand-protein systems: a globally convergent iterative method for the n × m case by Pradines, Joël R., Hasty, Jeff, Pakdaman, Khashayar

“…When n types of univalent ligands are competing for the binding to m types of protein sites, the determination of the system composition at equilibrium reduces…”
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Coherence resonance in excitable and oscillatory systems: the essential role of slow and fast dynamics by Pradines, J R, Osipov, G V, Collins, J J

“…Stochastic noise of an appropriate amplitude can maximize the coherence of the dynamics of certain types of excitable systems via a phenomenon known as…”
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