Search Results - "Pleij, C. W. A"

Tobacco rattle virus genome alterations in the Hosta hybrid ‘Green Fountain’ and other plants: reassortments, recombinations and deletions by Koenig, R., Lesemann, D.-E., Pleij, C. W. A.

“…Tobacco rattle virus from a Hosta hybrid contained one RNA1 (Ho-1) and two RNA2 species (Ho-2a, Ho-2b). Whereas Ho-1 resembles TRV Al RNA1 from Alstroemerias ,…”
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Deletions and recombinations with the RNA1 3' ends of different tobraviruses have created a multitude of tobacco rattle virus TCM-related RNA2 species in Alstroemeria and tulip by KOENIG, R, LESEMANN, D.-E, PFEILSTETTER, E, WINTER, S, PLEIJ, C. W. A

“…In vegetatively propagated Alstroemeria plants that showed pronounced stunting and necrotic leaf spots, a tobravirus infection was diagnosed in which one…”
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Analysis of the RNA of Potato yellow vein virus: evidence for a tripartite genome and conserved 3'-terminal structures among members of the genus Crinivirus by Livieratos, I.C, Eliasco, E, Muller, G, Olsthoorn, R.C.L, Salazar, L.F, Pleij, C.W.A, Coutts, R.H.A

“…1 Department of Biological Sciences, Imperial College London, Sir Alexander Fleming Building, Imperial College Road, London SW7 2AZ, UK 2 The International…”
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Structural parameters affecting the kinetics of RNA hairpin formation by Nagel, J. H. A., Flamm, C., Hofacker, I. L., Franke, K., de Smit, M. H., Schuster, P., Pleij, C. W. A.

“…There is little experimental knowledge on the sequence dependent rate of hairpin formation in RNA. We have therefore designed RNA sequences that can fold into…”
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Nemesia ring necrosis virus: a new tymovirus with a genomic RNA having a histidylatable tobamovirus-like 3' end by Koenig, R, Barends, S, Gultyaev, A.P, Lesemann, D.E, Vetten, H.J, Loss, S, Pleij, C.W.A

“…1 Biologische Bundesanstalt für Land- und Forstwirtschaft, Institut für Pflanzenvirologie, Mikrobiologie und biologische Sicherheit, Messeweg 11, D-38104…”
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Molecular characterization of isolates of anagyris vein yellowing virus, plantago mottle virus and scrophularia mottle virus - comparison of various approaches for tymovirus classification by KOENIG, R, PLEIJ, C. W. A, LESEMANN, D.-E, LOSS, S, VETTEN, H. J

“…The complete nucleotide sequences were determined for the genomic RNAs of three tymoviruses, i.e. isolates of anagyris vein yellowing virus (AVYV), plantago…”
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Molecular characterisation of potexviruses isolated from three different genera in the family Cactaceae by Koenig, R, Pleij, C.W.A, Loss, S, Burgermeister, W, Aust, H, Schiemann, J

“…The genome properties of three potexviruses which previously had been isolated from different genera in the family Cactaceae and had been found to be only…”
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RNA-protein interactions in spherical viruses by BINK, H. H. J, PLEIJ, C. W. A

“…The three-dimensional structure of many non-enveloped spherical RNA viruses has been determined in great detail, mainly using X-ray crystallography. Great…”
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Stem-loop structures can effectively substitute for an RNA pseudoknot in −1 ribosomal frameshifting by Yu, Chien-Hung, Noteborn, Mathieu H., Pleij, Cornelis W. A., Olsthoorn, René C. L.

“…−1 Programmed ribosomal frameshifting (PRF) in synthesizing the gag-pro precursor polyprotein of Simian retrovirus type-1 (SRV-1) is stimulated by a classical…”
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Molecular characterization of a new furovirus mainly infecting rye by Koenig, R, Pleij, C.W.A, Huth, W

“…The complete or almost complete nucleotide sequences were determined for the two RNAs of three different sources of a new furovirus which mainly infects rye…”
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Structure and variability of the 3' end of RNA 3 of Beet soil-borne pomovirus : a virus with uncertain pathogenic effects by KOENIG, R, PLEIJ, C. W. A, BÜTTNER, G

“…PCR products representing c. 550 3' terminal bases of Beet soil-borne pomovirus (BSBV) RNA 3 were compared for sources of this virus from all major…”
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PseudoBase: a database with RNA pseudoknots by van Batenburg, F H, Gultyaev, A P, Pleij, C W, Ng, J, Oliehoek, J

“…PseudoBase is a database containing structural, functional and sequence data related to RNA pseudo-knots. It can be reached at http://wwwbio. Leiden Univ.nl/…”
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PseudoBase: structural information on RNA pseudoknots by van Batenburg, F H, Gultyaev, A P, Pleij, C W

“…PseudoBase is a database containing structural, functional and sequence data related to RNA pseudo-knots. It can be reached at http://wwwbio.LeidenUniv.nl/…”
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Minimal template requirements for initiation of minus-strand synthesis in vitro by the RNA-dependent RNA polymerase of turnip yellow mosaic virus by Deiman, B.A.L.M, Koenen, A.K, Verlaan, P.W.G, Pleij, C.W.A

“…Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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A pH-jump approach for investigating secondary structure refolding kinetics in RNA by Nagel, J. H. A., Gultyaev, A. P., Öistämö, K. J., Gerdes, K., Pleij, C. W. A.

“…It has been shown that premature translation of the plasmid-mediated toxin in hok/sok of plasmid R1 and pnd/pndB of plasmid R483 is prevented during…”
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Base complementarity in helix 2 of the central pseudoknot in 16S rRNA is essential for ribosome functioning by Poot, Raymond A., van den Worm, Sjoerd H. E., Pleij, Cornelis W. A., van Duin, Jan

“…Helix 2 of the central pseudoknot structure in Escherichia coli 16S rRNA is formed by a long-distance interaction between nt 17–19 and 918–916, resulting in…”
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Similarities between the secondary structure of satellite tobacco mosaic virus and tobamovirus RNAs by Gultyaev, Alexander P, Van Batenburg, Eke, Pleij, Cornelis W. A

“…1 Institute of Theoretical Biology, University of Leiden, Kaiserstraat 63, 2311 GP Leiden and 2 Department of Biochemistry, Gorlaeus Laboratories, University…”
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Functional analysis of the SRV-1 RNA frameshifting pseudoknot by Olsthoorn, René C.L, Reumerman, Richard, Hilbers, Cornelis W, Pleij, Cornelis W.A, Heus, Hans A

“…Simian retrovirus type-1 uses programmed ribosomal frameshifting to control expression of the Gag-Pol polyprotein from overlapping gag and pol open-reading…”
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Novel application of sRNA: stimulation of ribosomal frameshifting by Olsthoorn, R C L, Laurs, M, Sohet, F, Hilbers, C W, Heus, H A, Pleij, C W A

“…Small RNAs play an important role in regulation of gene expression in eukaryotic and eubacterial cells by modulating gene expression both at the level of…”
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Hydrodynamic properties of RNA: effect of multivalent cations on the sedimentation behavior of turnip yellow mosaic virus RNA by Eecen, H. G, Van Dierendonck, J. H, Pleij, C. W. A, Mandel, M, Bosch, L

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