Search Results - "Pietrek, Lisa M."
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Hierarchical Ensembles of Intrinsically Disordered Proteins at Atomic Resolution in Molecular Dynamics Simulations
Published in Journal of chemical theory and computation (14-01-2020)“…Intrinsically disordered proteins (IDPs) constitute a large fraction of the human proteome and are critical in the regulation of cellular processes. A detailed…”
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Driving forces behind phase separation of the carboxy-terminal domain of RNA polymerase II
Published in Nature communications (25-09-2023)“…Eukaryotic gene regulation and pre-mRNA transcription depend on the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. Due to its highly repetitive,…”
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Global Structure of the Intrinsically Disordered Protein Tau Emerges from Its Local Structure
Published in JACS Au (28-03-2022)“…The paradigmatic disordered protein tau plays an important role in neuronal function and neurodegenerative diseases. To disentangle the factors controlling the…”
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Structural ensembles of disordered proteins from hierarchical chain growth and simulation
Published in Current opinion in structural biology (01-02-2023)“…Disordered proteins and nucleic acids play key roles in cellular function and disease. Here, we review recent advances in the computational exploration of the…”
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Hierarchical Assembly of Single-Stranded RNA
Published in Journal of chemical theory and computation (12-03-2024)“…Single-stranded RNA (ssRNA) plays a major role in the flow of genetic information–most notably, in the form of messenger RNA (mRNA)–and in the regulation of…”
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Disease‐linked TDP‐43 hyperphosphorylation suppresses TDP‐43 condensation and aggregation
Published in The EMBO journal (19-04-2022)“…Post‐translational modifications (PTMs) have emerged as key modulators of protein phase separation and have been linked to protein aggregation in…”
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From integrative atomic-resolution ensembles of disordered proteins to simulations of phase-separated condensates
Published in Biophysical journal (10-02-2023)Get full text
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Structural ensembles of disordered proteins from hierarchical chain growth and simulation
Published 28-10-2022“…Disordered proteins and nucleic acids play key roles in cellular function and disease. Here we review recent advances in the computational exploration of the…”
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