Search Results - "Petri, Victoria"

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease by Shimoyama, Mary, De Pons, Jeff, Hayman, G Thomas, Laulederkind, Stanley J F, Liu, Weisong, Nigam, Rajni, Petri, Victoria, Smith, Jennifer R, Tutaj, Marek, Wang, Shur-Jen, Worthey, Elizabeth, Dwinell, Melinda, Jacob, Howard

“…The Rat Genome Database (RGD, http://rgd.mcw.edu) provides the most comprehensive data repository and informatics platform related to the laboratory rat, one…”
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Guidelines for the functional annotation of microRNAs using the Gene Ontology by Huntley, Rachael P, Sitnikov, Dmitry, Orlic-Milacic, Marija, Balakrishnan, Rama, D'Eustachio, Peter, Gillespie, Marc E, Howe, Doug, Kalea, Anastasia Z, Maegdefessel, Lars, Osumi-Sutherland, David, Petri, Victoria, Smith, Jennifer R, Van Auken, Kimberly, Wood, Valerie, Zampetaki, Anna, Mayr, Manuel, Lovering, Ruth C

“…MicroRNA regulation of developmental and cellular processes is a relatively new field of study, and the available research data have not been organized to…”
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Exploring human disease using the Rat Genome Database by Shimoyama, Mary, Laulederkind, Stanley J F, De Pons, Jeff, Nigam, Rajni, Smith, Jennifer R, Tutaj, Marek, Petri, Victoria, Hayman, G Thomas, Wang, Shur-Jen, Ghiasvand, Omid, Thota, Jyothi, Dwinell, Melinda R

“…Rattus norvegicus, the laboratory rat, has been a crucial model for studies of the environmental and genetic factors associated with human diseases for over…”
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PhenoMiner: a quantitative phenotype database for the laboratory rat, Rattus norvegicus. Application in hypertension and renal disease by Wang, Shur-Jen, Laulederkind, Stanley J F, Hayman, G Thomas, Petri, Victoria, Liu, Weisong, Smith, Jennifer R, Nigam, Rajni, Dwinell, Melinda R, Shimoyama, Mary

“…Rats have been used extensively as animal models to study physiological and pathological processes involved in human diseases. Numerous rat strains have been…”
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Disease, Models, Variants and Altered Pathways—Journeying RGD Through the Magnifying Glass by Petri, Victoria, Hayman, G. Thomas, Tutaj, Marek, Smith, Jennifer R., Laulederkind, Stan, Wang, Shur-Jen, Nigam, Rajni, De Pons, Jeff, Shimoyama, Mary, Dwinell, Melinda R.

“…Understanding the pathogenesis of disease is instrumental in delineating its progression mechanisms and for envisioning ways to counteract it. In the process,…”
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RGD: a comparative genomics platform by Shimoyama, Mary, Smith, Jennifer R, Hayman, Tom, Laulederkind, Stan, Lowry, Tim, Nigam, Rajni, Petri, Victoria, Wang, Shur-Jen, Dwinell, Melinda, Jacob, Howard

“…The Rat Genome Database (RGD) (http://rgd.mcw.edu) provides a comprehensive platform for comparative genomics and genetics research. RGD houses gene, QTL and…”
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The rat genome database curators: who, what, where, why by Shimoyama, Mary, Hayman, G Thomas, Laulederkind, Stanley J F, Nigam, Rajni, Lowry, Timothy F, Petri, Victoria, Smith, Jennifer R, Wang, Shur-Jen, Munzenmaier, Diane H, Dwinell, Melinda R, Twigger, Simon N, Jacob, Howard J

“…  Established in 1999, RGD is the premier repository of rat genomic and genetic data and currently houses over 33,421 rat genes as well as human and mouse…”
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Analysis of disease-associated objects at the Rat Genome Database by Wang, Shur-Jen, Laulederkind, Stanley J F, Hayman, G T, Smith, Jennifer R, Petri, Victoria, Lowry, Timothy F, Nigam, Rajni, Dwinell, Melinda R, Worthey, Elizabeth A, Munzenmaier, Diane H, Shimoyama, Mary, Jacob, Howard J

“…The Rat Genome Database (RGD) is the premier resource for genetic, genomic and phenotype data for the laboratory rat, Rattus norvegicus. In addition to…”
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Copper Stabilizes a Heterodimer of the yCCS Metallochaperone and Its Target Superoxide Dismutase by Torres, Andrew S., Petri, Victoria, Rae, Tracey D., O'Halloran, Thomas V.

“…The copper chaperone for superoxide dismutase (CCS) activates the antioxidant enzyme Cu,Zn-SOD (SOD1) by directly inserting the copper cofactor into the apo…”
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DNA Sequence-Specific Recognition by the Saccharomyces cerevisiae “TATA” Binding Protein:  Promoter-Dependent Differences in the Thermodynamics and Kinetics of Binding by Petri, Victoria, Hsieh, Mark, Jamison, Elizabeth, Brenowitz, Michael

“…The equilibrium binding and association kinetics of the Saccharomyces cerevisiae TATA Binding Protein (TBP) to the E4 and Major Late promoters of adenovirus…”
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The BioPAX community standard for pathway data sharing by Bader, Gary D, Demir, Emek, Cary, Michael P, Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D'Eustachio, Peter, Schaefer, Carl, Luciano, Joanne, Schacherer, Frank, Martinez-Flores, Irma, Hu, Zhenjun, Jimenez-Jacinto, Veronica, Joshi-Tope, Geeta, Kandasamy, Kumaran, Lopez-Fuentes, Alejandra C, Mi, Huaiyu, Pichler, Elgar, Rodchenkov, Igor, Splendiani, Andrea, Tkachev, Sasha, Zucker, Jeremy, Gopinath, Gopal, Rajasimha, Harsha, Ramakrishnan, Ranjani, Shah, Imran, Syed, Mustafa, Anwar, Nadia, Babur, Özgün, Blinov, Michael, Brauner, Erik, Corwin, Dan, Donaldson, Sylva, Gibbons, Frank, Goldberg, Robert, Hornbeck, Peter, Luna, Augustin, Murray-Rust, Peter, Neumann, Eric, Reubenacker, Oliver, Samwald, Matthias, van Iersel, Martijn, Wimalaratne, Sarala, Allen, Keith, Braun, Burk, Whirl-Carrillo, Michelle, Cheung, Kei-Hoi, Dahlquist, Kam, Finney, Andrew, Gillespie, Marc, Glass, Elizabeth, Gong, Li, Haw, Robin, Honig, Michael, Hubaut, Olivier, Kane, David, Krupa, Shiva, Kutmon, Martina, Leonard, Julie, Marks, Debbie, Merberg, David, Petri, Victoria, Pico, Alex, Ravenscroft, Dean, Ren, Liya, Shah, Nigam, Sunshine, Margot, Tang, Rebecca, Whaley, Ryan, Letovksy, Stan, Buetow, Kenneth H, Rzhetsky, Andrey, Schachter, Vincent, Sobral, Bruno S, Dogrusoz, Ugur, McWeeney, Shannon, Aladjem, Mirit, Birney, Ewan, Collado-Vides, Julio, Goto, Susumu, Hucka, Michael, Novère, Nicolas Le, Maltsev, Natalia, Pandey, Akhilesh, Thomas, Paul, Wingender, Edgar, Karp, Peter D, Sander, Chris

“…Incompatible data storage formats have hindered the sharing and analyses of digital representations of biological pathways. BioPAX is a standardized language…”
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The Gene Ontology project in 2008 by [Anon.]

“…The Gene Ontology (GO) project (http://www.geneontology.org/) provides a set of structured, controlled vocabularies for community use in annotating genes, gene…”
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The Gene Ontology (GO) project in 2006 by Gene Ontology Consortium

“…The Gene Ontology (GO) project (http://www.geneontology.org) develops and uses a set of structured, controlled vocabularies for community use in annotating…”
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OBO-Edit—an ontology editor for biologists by Day-Richter, John, Harris, Midori A., Haendel, Melissa, Lewis, Suzanna

“…OBO-Edit is an open source, platform-independent ontology editor developed and maintained by the Gene Ontology Consortium. Implemented in Java, OBO-Edit uses a…”
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Epigenetics and Gene Expression ‐ Pathways, Pathway Suites and Networks at RGD's Pathway Portal by Petri, Victoria, Hayman, G. Thomas, Smith, Jennifer R, Tutaj, Marek, Thota, Jyothi, De Pons, Jeff, Dwinell, Melinda R, Shimoyama, Mary

“…Abstract only…”
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Comprehensive Coverage of Rat Models for Human Diseases at the Rat Genome Database by Wang, Shur‐Jen, Laulederkind, Stanely JF, Smith, Jennifer R, Hayman, George Thomas, Petri, Victoria, Dwinell, Melinda, Shimoyama, Mary

“…Abstract only Rat Genome Database (RGD) is a model organism database where organized functional annotations for rat, mouse and human are integrated and…”
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Discovering Interactions and Connections with Bioinformatics Tools at RGD by Shimoyama, Mary, Laulederkind, Stanley, De Pons, Jeff, Tutaj, Marek, Thota, Jyothi, Ghiasvand, Omid, Petri, Victoria, Smith, Jennifer R, Hayman, G. Thomas, Wang, Shur‐Jen, Dwinell, Melinda

“…Abstract only…”
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The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species by Bourne, Philip E

“…The Gene Ontology (GO) is a collaborative effort that provides structured vocabularies for annotating the molecular function, biological role, and cellular…”
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Latest reference genome rat strain‐specific variants provide new insight into human diseases by Tutaj, Monika, Smith, Jennifer R, De Pons, Jeffrey L, Laulederkind, Stanley J, Tutaj, Marek A, Hayman, G Thomas, Wang, Shur‐Jen, Petri, Victoria, Dwinell, Melinda R, Shimoyama, Mary E

“…Abstract only Popularization of DNA sequencing technologies and increasing amount of data generated by researchers demand efficient methods to search and…”
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The pathway ontology - updates and applications by Petri, Victoria, Jayaraman, Pushkala, Tutaj, Marek, Hayman, G Thomas, Smith, Jennifer R, De Pons, Jeff, Laulederkind, Stanley Jf, Lowry, Timothy F, Nigam, Rajni, Wang, Shur-Jen, Shimoyama, Mary, Dwinell, Melinda R, Munzenmaier, Diane H, Worthey, Elizabeth A, Jacob, Howard J

“…The Pathway Ontology (PW) developed at the Rat Genome Database (RGD), covers all types of biological pathways, including altered and disease pathways and…”
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