Search Results - "Peterson, Jake"

Identification of MYC intron 2 regions that modulate expression by Tompkins, Van S, Xue, Zheng, Peterson, Jake M, Rouse, Warren B, O'Leary, Collin A, Moss, Walter N

“…MYC pre-mRNA is spliced with high fidelity to produce the transcription factor known to regulate cellular differentiation, proliferation, apoptosis, and…”
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Targeting the SARS-CoV‑2 RNA Genome with Small Molecule Binders and Ribonuclease Targeting Chimera (RIBOTAC) Degraders by Haniff, Hafeez S, Tong, Yuquan, Liu, Xiaohui, Chen, Jonathan L, Suresh, Blessy M, Andrews, Ryan J, Peterson, Jake M, O’Leary, Collin A, Benhamou, Raphael I, Moss, Walter N, Disney, Matthew D

“…COVID-19 is a global pandemic, thus requiring multiple strategies to develop modalities against it. Herein, we designed multiple bioactive small molecules that…”
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Structure of the SARS-CoV‑2 Frameshift Stimulatory Element with an Upstream Multibranch Loop by Peterson, Jake M., Becker, Scott T., O’Leary, Collin A., Juneja, Puneet, Yang, Yang, Moss, Walter N.

“…The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshift stimulatory element (FSE) is necessary for programmed −1 ribosomal frameshifting…”
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In silico analysis of local RNA secondary structure in influenza virus A, B and C finds evidence of widespread ordered stability but little evidence of significant covariation by Peterson, Jake M., O’Leary, Collin A., Moss, Walter N.

“…Influenza virus is a persistent threat to human health; indeed, the deadliest modern pandemic was in 1918 when an H1N1 virus killed an estimated 50 million…”
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Universal and strain specific structure features of segment 8 genomic RNA of influenza A virus—application of 4-thiouridine photocrosslinking by Soszynska-Jozwiak, Marta, Pszczola, Maciej, Piasecka, Julita, Peterson, Jake M., Moss, Walter N., Taras-Goslinska, Katarzyna, Kierzek, Ryszard, Kierzek, Elzbieta

“…RNA structure in the influenza A virus (IAV) has been the focus of several studies that have shown connections between conserved secondary structure motifs and…”
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In vivo secondary structural analysis of Influenza A virus genomic RNA by Mirska, Barbara, Woźniak, Tomasz, Lorent, Dagny, Ruszkowska, Agnieszka, Peterson, Jake M., Moss, Walter N., Mathews, David H., Kierzek, Ryszard, Kierzek, Elzbieta

“…Influenza A virus (IAV) is a respiratory virus that causes epidemics and pandemics. Knowledge of IAV RNA secondary structure in vivo is crucial for a better…”
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Targeting sgRNA N secondary structure as a way of inhibiting SARS-CoV-2 replication by Baliga-Gil, Agnieszka, Soszynska-Jozwiak, Marta, Ruszkowska, Agnieszka, Szczesniak, Izabela, Kierzek, Ryszard, Ciechanowska, Maria, Trybus, Magdalena, Jackowiak, Paulina, Peterson, Jake M., Moss, Walter N., Kierzek, Elzbieta

“…SARS-CoV-2 is a betacoronavirus that causes COVID-19, a global pandemic that has resulted in many infections, deaths, and socio-economic challenges. The virus…”
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Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment by Szutkowska, Barbara, Wieczorek, Klaudia, Kierzek, Ryszard, Zmora, Pawel, Peterson, Jake M, Moss, Walter N, Mathews, David H, Kierzek, Elzbieta

“…Influenza A virus (IAV) is a member of the single-stranded RNA (ssRNA) family of viruses. The most recent global pandemic caused by the SARS-CoV-2 virus has…”
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A map of the SARS-CoV-2 RNA structurome by Andrews, Ryan J, O’Leary, Collin A, Tompkins, Van S, Peterson, Jake M, Haniff, Hafeez S, Williams, Christopher, Disney, Matthew D, Moss, Walter N

“…Abstract SARS-CoV-2 has exploded throughout the human population. To facilitate efforts to gain insights into SARS-CoV-2 biology and to target the virus…”
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Discovery of RNA secondary structural motifs using sequence-ordered thermodynamic stability and comparative sequence analysis by Peterson, Jake M., O'Leary, Collin A., Coppenbarger, Evelyn C., Tompkins, Van S., Moss, Walter N.

“…Major advances in RNA secondary structural motif prediction have been achieved in the last few years; however, few methods harness the predictive power of…”
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Photolysis of dinitrobenzyl alcohols, dinitrobenzaldehydes, and nitrobenzoic acids in seawater, estuary water, and pure water by Luning Prak, Dianne J., Gordon, Katherine C., Peterson, Jake M., O'Sullivan, Daniel W.

“…Photolytic transformation of the propellants 2,4-dinitrotoluene (2,4-DNT) and 2,6-dinitrotoluene (2,6-DNT) produces 2,4-dinitrobenzyl alcohol (2,4-DNBOH),…”
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Thermodynamic Stability of hnRNP A1 Low Complexity Domain Revealed by High-Pressure NMR by Levengood, Jeffrey D., Peterson, Jake, Tolbert, Blanton S., Roche, Julien

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Thermodynamic stability of hnRNP A1 low complexity domain revealed by high‐pressure NMR by Levengood, Jeffrey D., Peterson, Jake, Tolbert, Blanton S., Roche, Julien

“…We have investigated the pressure‐ and temperature‐induced conformational changes associated with the low complexity domain of hnRNP A1, an RNA‐binding protein…”
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High-Throughput Characterization of RNA Structural Motifs by Peterson, Jake Martin

“…Ribonucleic acids (RNAs) are essential to all forms of life. Due to thermodynamic pressures, RNAs have a propensity to fold and form structures either within…”
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The association between white blood cell count and outcomes in patients with idiopathic pulmonary fibrosis by Nathan, Steven D., Brown, A. Whitney, Mogulkoc, Nesrin, Soares, Flavia, Collins, Ashley C., Cheng, Joyce, Peterson, Jake, Cannon, Brenna, King, Christopher S., Barnett, Scott D.

“…The course of idiopathic pulmonary fibrosis (IPF) is uncertain with variable patterns of disease progression. We sought to evaluate the prognostic utility of…”
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Photolysis of dinitrobenzyl alcohols, dinitrobenzaldehydes, and nitrobenzoic acids in seawater, estuary water, and pure water by LUNING PRAK, Dianne J, GORDON, Katherine C, PETERSON, Jake M, O'SULLIVAN, Daniel W

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Identification of MYC intron 2 regions that modulate expression by Van S. Tompkins, Zheng Xue, Jake M. Peterson, Warren B. Rouse, Collin A. O’Leary, Walter N. Moss

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