Search Results - "Petereit, Jakob"

Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003 by Marsh, Jacob I., Hu, Haifei, Petereit, Jakob, Bayer, Philipp E., Valliyodan, Babu, Batley, Jacqueline, Nguyen, Henry T., Edwards, David

“…Key message The major soy protein QTL, cqProt-003, was analysed for haplotype diversity and global distribution, and results indicate 304 bp deletion and…”
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Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction by Gill, Mitchell, Anderson, Robyn, Hu, Haifei, Bennamoun, Mohammed, Petereit, Jakob, Valliyodan, Babu, Nguyen, Henry T, Batley, Jacqueline, Bayer, Philipp E, Edwards, David

“…Recent growth in crop genomic and trait data have opened opportunities for the application of novel approaches to accelerate crop improvement. Machine learning…”
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The application of pangenomics and machine learning in genomic selection in plants by Bayer, Philipp E., Petereit, Jakob, Danilevicz, Monica Furaste, Anderson, Robyn, Batley, Jacqueline, Edwards, David

“…Genomic selection approaches have increased the speed of plant breeding, leading to growing crop yields over the last decade. However, climate change is…”
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Pangenomes as a Resource to Accelerate Breeding of Under-Utilised Crop Species by Tay Fernandez, Cassandria Geraldine, Nestor, Benjamin John, Danilevicz, Monica Furaste, Gill, Mitchell, Petereit, Jakob, Bayer, Philipp Emanuel, Finnegan, Patrick Michael, Batley, Jacqueline, Edwards, David

“…Pangenomes are a rich resource to examine the genomic variation observed within a species or genera, supporting population genetics studies, with applications…”
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Expanding Gene-Editing Potential in Crop Improvement with Pangenomes by Tay Fernandez, Cassandria G, Nestor, Benjamin J, Danilevicz, Monica F, Marsh, Jacob I, Petereit, Jakob, Bayer, Philipp E, Batley, Jacqueline, Edwards, David

“…Pangenomes aim to represent the complete repertoire of the genome diversity present within a species or cohort of species, capturing the genomic structural…”
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Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes by Bayer, Philipp E., Petereit, Jakob, Durant, Éloi, Monat, Cécile, Rouard, Mathieu, Hu, Haifei, Chapman, Brett, Li, Chengdao, Cheng, Shifeng, Batley, Jacqueline, Edwards, David

“…Bread wheat (Triticum aestivum L.) is one of humanity's most important staple crops, characterized by a large and complex genome with a high level of gene…”
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Isolation and Sequencing of Chromosome Arm 7RS of Rye, Secale cereale by Petereit, Jakob, Tay Fernandez, Cassandria, Marsh, Jacob I., Bayer, Philipp E., Thomas, William J. W., Aliyeva, Aybeniz Javad, Karafiátová, Miroslava, Doležel, Jaroslav, Batley, Jacqueline, Edwards, David

“…Rye (Secale cereale) is a climate-resilient cereal grown extensively as grain or forage crop in Northern and Eastern Europe. In addition to being an important…”
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The conservation of gene models can support genome annotation by Tay Fernandez, Cassandria G., Bayer, Philipp E., Petereit, Jakob, Varshney, Rajeev, Batley, Jacqueline, Edwards, David

“…Abstract Many genome annotations include false‐positive gene models, leading to errors in phylogenetic and comparative studies. Here, we propose a method to…”
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Pangenomics and Crop Genome Adaptation in a Changing Climate by Petereit, Jakob, Bayer, Philipp E, Thomas, William J W, Tay Fernandez, Cassandria G, Amas, Junrey, Zhang, Yueqi, Batley, Jacqueline, Edwards, David

“…During crop domestication and breeding, wild plant species have been shaped into modern high-yield crops and adapted to the main agro-ecological regions…”
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DNABERT-based explainable lncRNA identification in plant genome assemblies by Danilevicz, Monica F., Gill, Mitchell, Fernandez, Cassandria G. Tay, Petereit, Jakob, Upadhyaya, Shriprabha R., Batley, Jacqueline, Bennamoun, Mohammed, Edwards, David, Bayer, Philipp E.

“…Long non-coding ribonucleic acids (lncRNAs) have been shown to play an important role in plant gene regulation, involving both epigenetic and transcript…”
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Author Correction: Identification of a novel cAMP dependent protein kinase A phosphorylation site on the human cardiac calcium channel by Szappanos, Henrietta Cserne, Muralidharan, Padmapriya, Ingley, Evan, Petereit, Jakob, Millar, A. Harvey, Hool, Livia C.

“…A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper…”
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Genetic and Genomic Resources for Soybean Breeding Research by Petereit, Jakob, Marsh, Jacob I, Bayer, Philipp E, Danilevicz, Monica F, Thomas, William J W, Batley, Jacqueline, Edwards, David

“…Soybean ( ) is a legume species of significant economic and nutritional value. The yield of soybean continues to increase with the breeding of improved…”
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Evaluating Plant Gene Models Using Machine Learning by Upadhyaya, Shriprabha R., Bayer, Philipp E., Tay Fernandez, Cassandria G., Petereit, Jakob, Batley, Jacqueline, Bennamoun, Mohammed, Boussaid, Farid, Edwards, David

“…Gene models are regions of the genome that can be transcribed into RNA and translated to proteins, or belong to a class of non-coding RNA genes. The prediction…”
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Daisychain: Search and Interactive Visualisation of Homologs in Genome Assemblies by Schliebs, Oliver, Chan, Chon-Kit Kenneth, Bayer, Philipp E., Petereit, Jakob, Singh, Ajit, Hassani-Pak, Keywan, Batley, Jacqueline, Edwards, David

“…Daisychain is an interactive graph visualisation and search tool for custom-built gene homology databases. The main goal of Daisychain is to allow researchers…”
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Pipeline Automation via Snakemake by Petereit, Jakob

“…With third generation DNA sequencing and a general reduction of sequencing costs, the production of bioinformatic data has become easier than ever. Several…”
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Loss of conserved mitochondrial CLPP and its functions lead to different phenotypes in plants and other organisms by Huang, Shaobai, Petereit, Jakob, Millar, A. Harvey

“…Caseinolytic protease (CLPP) is an energy-dependent serine-type protease that plays a role in protein quality control. The CLPP gene is highly conserved across…”
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Protein turnover rates in plant mitochondria by Huang, Shaobai, Li, Lei, Petereit, Jakob, Millar, A. Harvey

“…•Stable isotope labelling can be used to measure the turnover rate of specific mitochondrial proteins in vivo.•Mitochondrial protein turnover rates vary >100…”
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Rubisco lysine acetylation occurs at very low stoichiometry in mature Arabidopsis leaves: implications for regulation of enzyme function by O'Leary, Brendan M, Scafaro, Andrew P, Fenske, Ricarda, Duncan, Owen, Ströher, Elke, Petereit, Jakob, Millar, A Harvey

“…Multiple studies have shown ribulose-1,5-bisphosphate carboxylase/oxygenase (E.C. 4.1.1.39; Rubisco) to be subject to Lys-acetylation at various residues;…”
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Mitochondrial CLPP2 Assists Coordination and Homeostasis of Respiratory Complexes1[OPEN] by Petereit, Jakob, Duncan, Owen, Murcha, Monika W., Fenske, Ricarda, Cincu, Emilia, Cahn, Jonathan, Pružinská, Adriana, Ivanova, Aneta, Kollipara, Laxmikanth, Wortelkamp, Stefanie, Sickmann, Albert, Lee, Jiwon, Lister, Ryan, Millar, A. Harvey, Huang, Shaobai

“…Caseinolytic protease contributes to the mitochondrial protein degradation network through supporting coordination and homeostasis of protein complexes encoded…”
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Legume‐wide comparative analysis of pod shatter locus PDH1 reveals phaseoloid specificity, high cowpea expression, and stress responsive genomic context by Marsh, Jacob I, Nestor, Benjamin J, Petereit, Jakob, Tay Fernandez, Cassandria G, Bayer, Philipp E, Batley, Jacqueline, Edwards, David

“…SUMMARY Pod dehiscence is a major source of yield loss in legumes, which is exacerbated by aridity. Disruptive mutations in “Pod indehiscent 1” (PDH1), a pod…”
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