Search Results - "Persson, Søren"

Towards standards for human fecal sample processing in metagenomic studies by Costea, Paul I, Zeller, Georg, Sunagawa, Shinichi, Pelletier, Eric, Alberti, Adriana, Levenez, Florence, Tramontano, Melanie, Driessen, Marja, Hercog, Rajna, Jung, Ferris-Elias, Kultima, Jens Roat, Hayward, Matthew R, Coelho, Luis Pedro, Allen-Vercoe, Emma, Bertrand, Laurie, Blaut, Michael, Brown, Jillian R M, Carton, Thomas, Cools-Portier, Stéphanie, Daigneault, Michelle, Derrien, Muriel, Druesne, Anne, de Vos, Willem M, Finlay, B Brett, Flint, Harry J, Guarner, Francisco, Hattori, Masahira, Heilig, Hans, Luna, Ruth Ann, van Hylckama Vlieg, Johan, Junick, Jana, Klymiuk, Ingeborg, Langella, Philippe, Le Chatelier, Emmanuelle, Mai, Volker, Manichanh, Chaysavanh, Martin, Jennifer C, Mery, Clémentine, Morita, Hidetoshi, O'Toole, Paul W, Orvain, Céline, Patil, Kiran Raosaheb, Penders, John, Persson, Søren, Pons, Nicolas, Popova, Milena, Salonen, Anne, Saulnier, Delphine, Scott, Karen P, Singh, Bhagirath, Slezak, Kathleen, Veiga, Patrick, Versalovic, James, Zhao, Liping, Zoetendal, Erwin G, Ehrlich, S Dusko, Dore, Joel, Bork, Peer

“…Testing 21 different fecal DNA extraction protocols in multiple laboratories results in a standardized protocol with the potential to improve comparability…”
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Dogs are carriers of Clostridioides difficile lineages associated with human community-acquired infections by Bjöersdorff, Olivia Graaf, Lindberg, Sanna, Kiil, Kristoffer, Persson, Søren, Guardabassi, Luca, Damborg, Peter

“…There is an increasing concern about the role of animals as reservoirs of Clostridioides difficile. In this study, we investigated prevalence, antimicrobial…”
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Subtyping Method for Escherichia coli Shiga Toxin (Verocytotoxin) 2 Variants and Correlations to Clinical Manifestations by Persson, Søren, Olsen, Katharina E.P, Ethelberg, Steen, Scheutz, Flemming

“…Shiga toxin 2 (Stx2) from Shiga toxin-producing Escherichia coli (STEC) was subtyped by a method involving partial sequencing of the stxAB₂ operon. Of 255…”
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Multiplex PCR Method for Detection of Clostridium difficile tcdA, tcdB, cdtA, and cdtB and Internal In-Frame Deletion of tcdC by PERSSON, Søren, JENSEN, Joan N, OLSEN, Katharina E. P

“…Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Identification of clinical aeromonas species by rpoB and gyrB sequencing and development of a multiplex PCR method for detection of Aeromonas hydrophila, A. caviae, A. veronii, and A. media by Persson, Søren, Al-Shuweli, Suzan, Yapici, Seval, Jensen, Joan N, Olsen, Katharina E P

“…Conventional identification of Aeromonas species based on biochemical methods is challenged by the heterogeneous nature of the species. Here, we present a new…”
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Sentinel surveillance and epidemiology of Clostridioides difficile in Denmark, 2016 to 2019 by Persson, Søren, Nielsen, Hans Linde, Coia, John Eugenio, Engberg, Jørgen, Olesen, Bente Scharvik, Engsbro, Anne Line, Petersen, Andreas Munk, Holt, Hanne Marie, Lemming, Lars, Marmolin, Ea Sofie, Søndergaard, Turid Snekloth, Andersen, Leif Percival, Jensen, Mie Birgitte Frid, Wiuff, Camilla, Sørensen, Gitte, Nielsen, Sofie Holtsmark, Nielsen, Eva Møller

“…BackgroundSince 2008, Danish national surveillance of has focused on binary toxin-positive strains in order to monitor epidemic types such as PCR ribotype (RT)…”
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Multiplex PCR for identification of Campylobacter coli and Campylobacter jejuni from pure cultures and directly on stool samples by Persson, Soren, Olsen, Katharina EP

“…Department of Bacteriology, Mycology and Parasitology, National Reference Laboratory for Enteropathogenic Bacteria, Unit of Gastrointestinal Infections,…”
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Genomic Characterization of Enteroaggregative Escherichia coli From Children in Mali by Boisen, Nadia, Scheutz, Hemming, Rasko, David A., Redman, Julia C., Persson, Seren, Simon, Jakub, Kotloff, Karen L., Levine, Myron M., Sow, Samba, Tamboura, Boubou, Toure, Aliou, Malle, Dramane, Panchalingam, Sandra, Krogfelt, Karen A., Nataro, James P.

“…Background. Enteroaggregative Escherichia coli (EAEC) is a cause of epidemic and sporadic diarrhea, yet its role as an enteric pathogen is not fully…”
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Towards diagnostic metagenomics of Campylobacter in fecal samples by Andersen, Sandra Christine, Kiil, Kristoffer, Harder, Christoffer Bugge, Josefsen, Mathilde Hasseldam, Persson, Søren, Nielsen, Eva Møller, Hoorfar, Jeffrey

“…The development of diagnostic metagenomics is driven by the need for universal, culture-independent methods for detection and characterization of pathogens to…”
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Genomic study of European Clostridioides difficile ribotype 002/sequence type 8 by Dost, Ines, Abdel-Glil, Mostafa, Persson, Søren, Conza, Karen Loaiza, Oleastro, Mónica, Alves, Frederico, Maurischat, Sven, Scholtzek, Anissa, Mazuet, Christelle, Diancourt, Laure, Tenson, Tanel, Schmoock, Gernot, Neubauer, Heinrich, Schwarz, Stefan, Seyboldt, Christian

“…has significant clinical importance as a leading cause of healthcare-associated infections, with symptoms ranging from mild diarrhoea to severe colitis, and…”
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Subtype-Specific Suppression of Shiga Toxin 2 Released from Escherichia coli upon Exposure to Protein Synthesis Inhibitors by Pedersen, Malene Gantzhorn, Hansen, Claus, Riise, Erik, Persson, Søren, Olsen, Katharina E.P

“…Shiga toxins (Stx) are important virulence factors in the pathogenesis of severe disease including hemolytic-uremic syndrome, caused by Stx-producing…”
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A search for Clostridium difficile ribotypes 027 and 078 in Brazil by de Almeida Monteiro, Alexandre, Pires, Renata Neto, Persson, Søren, Filho, Edison Moraes Rodrigues, Pasqualotto, Alessandro Comarú

“…Toxigenic strains of Clostridium difficile may be disseminating. Here we prospectively screened patients with nosocomial diarrhoea in two hospitals in Brazil…”
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Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature by SCHEUTZ, Flemming, TEEL, Louise D, STROCKBINE, Nancy A, MELTON-CELSA, Angela R, SANCHEZ, Maria, PERSSON, Soren, O'BRIEN, Alison D, BEUTIN, Lothar, PIERARD, Denis, BUVENS, Glenn, KARCH, Helge, MELLMANN, Alexander, CAPRIOLI, Alfredo, TOZZOLI, Rosangela, MORABITO, Stefano

“…OA  Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+…”
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Five commercial DNA extraction systems tested and compared on a stool sample collection by Persson, Søren, de Boer, Richard F, Kooistra-Smid, Anna M.D, Olsen, Katharina E.P

“…Abstract In this study, 5 different commercial DNA extraction systems were tested on a stool sample collection containing 81 clinical stool specimens that were…”
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Real-time TaqMan polymerase chain reaction–based genus-identification and pyrosequencing-based species identification of Campylobacter jejuni, C. coli, C. lari, C. upsaliensis , and C. fetus directly on stool samples by Persson, Søren, Petersen, Henrik M, Jespersgaard, Cathrine, Olsen, Katharina E.P

“…Abstract A new method was developed for Campylobacter identification and applied directly on 599 stool samples from diarrhoeagenic patients. Here, the gyrase B…”
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Characterization of two cytochrome oxidase operons in the marine cyanobacterium Synechococcus sp. PCC 7002: inactivation of ctaDI affects the PS I:PS II ratio by Nomura, Christopher T, Persson, Søren, Shen, Gaozhong, Inoue-Sakamoto, Kaori, Bryant, Donald A

“…Cyanobacteria have versatile electron transfer pathways and many of the proteins involved are functional in both respiratory and photosynthetic electron…”
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Transcription factor NtcB specifically controls the nitrate assimilation genes in the marine cyanobacterium Synechococcus sp. strain PCC 7002 by Sakamoto, Toshio, Inoue-Sakamoto, Kaori, Persson, Søren, Bryant, Donald A.

“…SUMMARY The ntcA and ntcB genes, encoding cAMP‐receptor‐protein (CRP) type and LysR type transcriptional regulators, respectively, were isolated from the…”
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Whole-genome Sequencing Used to Investigate a Nationwide Outbreak of Listeriosis Caused by Ready-to-eat Delicatessen Meat, Denmark, 2014 by Jensen, Anne Kvistholm, Nielsen, Eva Møller, Björkman, Jonas Torgny, Jensen, Tenna, Müller, Luise, Persson, Søren, Bjerager, Gitte, Perge, Annette, Krause, Tyra Grove, Kiil, Kristoffer, Sørensen, Gitte, Andersen, Jens Kirk, Mølbak, Kåre, Ethelberg, Steen

“…Background. Listeriosis is a serious foodborne infection. Outbreaks of listeriosis occur rarely, but have often proved difficult to solve. In June 2014, we…”
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Microbial diversity in fecal samples depends on DNA extraction method: easyMag DNA extraction compared to QIAamp DNA stool mini kit extraction by Mirsepasi, Hengameh, Persson, Søren, Struve, Carsten, Andersen, Lee O B, Petersen, Andreas M, Krogfelt, Karen A

“…There are challenges, when extracting bacterial DNA from specimens for molecular diagnostics, since fecal samples also contain DNA from human cells and many…”
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A search for Clostridium difficileribotypes 027 and 078 in Brazil by Monteiro, Alexandre de Almeida, Pires Neto, Renata, Persson, Søren, Rodrigues Filho, Edison Moraes, Pasqualotto, Alessandro Comarú

“…Toxigenic strains of Clostridium difficile may be disseminating. Here we prospectively screened patients with nosocomial diarrhoea in two hospitals in Brazil…”
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