Search Results - "Pearman, John K"

Pest Alert Tool—a web-based application for flagging species of concern in metabarcoding datasets by Zaiko, Anastasija, Scheel, Maximilian, Schattschneider, Jessica, von Ammon, Ulla, Scriver, Michelle, Pochon, Xavier, Pearman, John K

“…Abstract Advances in high-throughput sequencing (HTS) technologies and their increasing affordability have fueled environmental DNA (eDNA) metabarcoding data…”
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Assessment of Zooplankton Community Composition along a Depth Profile in the Central Red Sea by Pearman, John K, Irigoien, Xabier

“…The composition of zooplankton in the water column has received limited attention in the main body of the Red Sea and this study investigates the change in the…”
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Investigating the effects of anthropogenic stressors on lake biota using sedimentary DNA by Barouillet, Cécilia, Monchamp, Marie‐Eve, Bertilsson, Stefan, Brasell, Katie, Domaizon, Isabelle, Epp, Laura S., Ibrahim, Anan, Mejbel, Hebah, Nwosu, Ebuka Canisius, Pearman, John K., Picard, Maïlys, Thomson‐Laing, Georgia, Tsugeki, Narumi, Von Eggers, Jordan, Gregory‐Eaves, Irene, Pick, Frances, Wood, Susanna A., Capo, Eric

“…Abstract Analyses of sedimentary DNA ( sed DNA) have increased exponentially over the last decade and hold great potential to study the effects of…”
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Responses of the coral reef cryptobiome to environmental gradients in the Red Sea by Villalobos, Rodrigo, Aylagas, Eva, Ellis, Joanne I, Pearman, John K, Anlauf, Holger, Curdia, Joao, Lozano-Cortes, Diego, Mejia, Alejandro, Roth, Florian, Berumen, Michael L, Carvalho, Susana

“…An essential component of the coral reef animal diversity is the species hidden in crevices within the reef matrix, referred to as the cryptobiome. These…”
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Please mind the gap – Visual census and cryptic biodiversity assessment at central Red Sea coral reefs by Pearman, John K., Anlauf, Holger, Irigoien, Xabier, Carvalho, Susana

“…Coral reefs harbor the most diverse assemblages in the ocean, however, a large proportion of the diversity is cryptic and, therefore, undetected by standard…”
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Investigating variability in microbial community composition in replicate environmental DNA samples down lake sediment cores by Pearman, John K, Thomson-Laing, Georgia, Howarth, Jamie D, Vandergoes, Marcus J, Thompson, Lucy, Rees, Andrew, Wood, Susanna A

“…Lake sediments are natural archives that accumulate information on biological communities and their surrounding catchments. Paleolimnology has traditionally…”
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Microbial planktonic communities in the Red Sea: high levels of spatial and temporal variability shaped by nutrient availability and turbulence by Pearman, John K., Ellis, Joanne, Irigoien, Xabier, Sarma, Y. V. B., Jones, Burton H., Carvalho, Susana

“…The semi-enclosed nature of the Red Sea (20.2°N–38.5°N) makes it a natural laboratory to study the influence of environmental gradients on microbial…”
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A comparison of two gene regions for assessing community composition of eukaryotic marine microalgae from coastal ecosystems by Stuart, Jacqui, Ryan, Ken G., Pearman, John K., Thomson-Laing, Jacob, Hampton, Hannah G., Smith, Kirsty F.

“…Two gene regions commonly used to characterise the diversity of eukaryotic communities using metabarcoding are the 18S ribosomal DNA V4 and V9 gene regions. We…”
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Exploring the larval fish community of the central Red Sea with an integrated morphological and molecular approach by Isari, Stamatina, Pearman, John K, Casas, Laura, Michell, Craig T, Curdia, Joao, Berumen, Michael L, Irigoien, Xabier

“…An important aspect of population dynamics for coral reef fishes is the input of new individuals from the pelagic larval pool. However, the high biodiversity…”
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Bacterial and protist community changes during a phytoplankton bloom by Pearman, John K., Casas, Laura, Merle, Tony, Michell, Craig, Irigoien, Xabier

“…The present study aims to characterize the change in the composition and structure of the bacterial and microzooplankton planktonic communities in relation to…”
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Using metabarcoding and droplet digital PCR to investigate drivers of historical shifts in cyanobacteria from six contrasting lakes by Picard, Maïlys, Pochon, Xavier, Atalah, Javier, Pearman, John K., Rees, Andrew, Howarth, Jamie D., Moy, Christopher M., Vandergoes, Marcus J., Hawes, Ian, Khan, Samiullah, Wood, Susanna A.

“…The frequency and intensity of cyanobacterial blooms is increasing worldwide. Multiple factors are implicated, most of which are anthropogenic. New Zealand…”
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Metabarcoding Reveals Lacustrine Picocyanobacteria Respond to Environmental Change Through Adaptive Community Structuring by Schallenberg, Lena A, Pearman, John K, Burns, Carolyn W, Wood, Susanna A

“…Picocyanobacteria (Pcy) are important yet understudied components of lake foodwebs. While phylogenetic studies of isolated strains reveal a high diversity of…”
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Biodiversity patterns of the coral reef cryptobiota around the Arabian Peninsula by Villalobos, Rodrigo, Aylagas, Eva, Pearman, John K., Curdia, Joao, Coker, Darren, Bell, Alyssa Clothilde, Brown, Shannon D., Rowe, Katherine, Lozano-Cortés, Diego, Rabaoui, Lotfi J., Marshell, Alyssa, Qurban, Mohammad, Jones, Burton, Berumen, Michael Lee, Carvalho, Susana

“…The Arabian Peninsula accounts for approximately 6% of the world’s coral reefs. Some thrive in extreme environments of temperature and salinity. Using 51…”
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Seasonal and Spatial Variations in Bacterial Communities From Tetrodotoxin-Bearing and Non-tetrodotoxin-Bearing Clams by Biessy, Laura, Pearman, John K., Smith, Kirsty F., Hawes, Ian, Wood, Susanna A.

“…Tetrodotoxin (TTX) is one of the most potent naturally occurring compounds and is responsible for many human intoxications worldwide. Paphies australis are…”
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Comparing sediment DNA extraction methods for assessing organic enrichment associated with marine aquaculture by Pearman, John K, Keeley, Nigel B, Wood, Susanna A, Laroche, Olivier, Zaiko, Anastasija, Thomson-Laing, Georgia, Biessy, Laura, Atalah, Javier, Pochon, Xavier

“…Marine sediments contain a high diversity of micro- and macro-organisms which are important in the functioning of biogeochemical cycles. Traditionally,…”
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The Role of Environmental Processes and Geographic Distance in Regulating Local and Regionally Abundant and Rare Bacterioplankton in Lakes by Pearman, John K, Thomson-Laing, Georgia, Thomson-Laing, Jacob, Thompson, Lucy, Waters, Sean, Reyes, Lizette, Howarth, Jamie D, Vandergoes, Marcus J, Wood, Susanna A

“…Bacteria are vital components of lake systems, driving a variety of biogeochemical cycles and ecosystem services. Bacterial communities have been shown to have…”
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Picocyanobacteria Community and Cyanophage Infection Responses to Nutrient Enrichment in a Mesocosms Experiment in Oligotrophic Waters by Coello-Camba, Alexandra, Diaz-Rua, Ruben, Duarte, Carlos M., Irigoien, Xabier, Pearman, John K., Alam, Intikhab S., Agusti, Susana

“…Prochlorococcus and Synechococcus are pico-sized cyanobacteria that play a fundamental role in oceanic primary production, being particularly important in…”
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Disentangling eukaryotic biodiversity patterns from man‐made environments (port and marina) and nearby coral reefs in the Red Sea: A focus on the surveillance of non‐indigenous species by Aylagas, Eva, Shchepanik, Hailey, Pearman, John K., Parisi, Bruno, Curdia, Joao, Berumen, Michael L., Carvalho, Susana

“…Man‐made environments such as ports and marinas are gateways for many marine non‐indigenous species (mNIS) transported via shipping worldwide. These habitats…”
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A comparative analysis of metabarcoding and morphology‐based identification of benthic communities across different regional seas by Cahill, Abigail E., Pearman, John K., Borja, Angel, Carugati, Laura, Carvalho, Susana, Danovaro, Roberto, Dashfield, Sarah, David, Romain, Féral, Jean‐Pierre, Olenin, Sergej, Šiaulys, Andrius, Somerfield, Paul J., Trayanova, Antoaneta, Uyarra, Maria C., Chenuil, Anne

“…In a world of declining biodiversity, monitoring is becoming crucial. Molecular methods, such as metabarcoding, have the potential to rapidly expand our…”
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Metabarcoding Reveals Seasonal and Temperature-Dependent Succession of Zooplankton Communities in the Red Sea by Casas, Laura, Pearman, John K., Irigoien, Xabier

“…Very little is known about the composition and the annual cycle of zooplankton assemblages in the Red Sea, a confined water body characterized by a high…”
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