Search Results - "Patel‐Murray, Natasha"

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    Cell freezing protocol suitable for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells by Milani, Pamela, Escalante-Chong, Renan, Shelley, Brandon C., Patel-Murray, Natasha L., Xin, Xiaofeng, Adam, Miriam, Mandefro, Berhan, Sareen, Dhruv, Svendsen, Clive N., Fraenkel, Ernest

    Published in Scientific reports (05-05-2016)
    “…In recent years, the assay for transposase-accessible chromatin using sequencing (ATAC-Seq) has become a fundamental tool of epigenomic research. However, it…”
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    A Multi-Omics Interpretable Machine Learning Model Reveals Modes of Action of Small Molecules by Patel-Murray, Natasha L., Adam, Miriam, Huynh, Nhan, Wassie, Brook T., Milani, Pamela, Fraenkel, Ernest

    Published in Scientific reports (22-01-2020)
    “…High-throughput screening and gene signature analyses frequently identify lead therapeutic compounds with unknown modes of action (MoAs), and the resulting…”
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    Disease related changes in ATAC-seq of iPSC-derived motor neuron lines from ALS patients and controls by Tsitkov, Stanislav, Valentine, Kelsey, Kozareva, Velina, Donde, Aneesh, Frank, Aaron, Lei, Susan, E. Van Eyk, Jennifer, Finkbeiner, Steve, Rothstein, Jeffrey D., Thompson, Leslie M., Sareen, Dhruv, Svendsen, Clive N., Fraenkel, Ernest

    Published in Nature communications (02-05-2024)
    “…Amyotrophic Lateral Sclerosis (ALS), like many other neurodegenerative diseases, is highly heritable, but with only a small fraction of cases explained by…”
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    Identifying patterns in amyotrophic lateral sclerosis progression from sparse longitudinal data by Ramamoorthy, Divya, Severson, Kristen, Ghosh, Soumya, Sachs, Karen, Glass, Jonathan D, Fournier, Christina N, Herrington, Todd M, Berry, James D, Ng, Kenney, Fraenkel, Ernest

    Published in Nature Computational Science (01-09-2022)
    “…The clinical presentation of amyotrophic lateral sclerosis (ALS), a fatal neurodegenerative disease, varies widely across patients, making it challenging to…”
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