Search Results - "Parnell, Jacob"

From the Lab to the Farm: An Industrial Perspective of Plant Beneficial Microorganisms by Parnell, J Jacob, Berka, Randy, Young, Hugh A, Sturino, Joseph M, Kang, Yaowei, Barnhart, D M, DiLeo, Matthew V

“…Any successful strategy aimed at enhancing crop productivity with microbial products ultimately relies on the ability to scale at regional to global levels…”
Get full text

Two‐step Testing for Clostridioides Difficile is Inadequate in Differentiating Infection From Colonization in Children by Parnell, Jacob M., Fazili, Irtiqa, Bloch, Sarah C., Lacy, D. Borden, Garcia‐Lopez, Valeria A., Bernard, Rachel, Skaar, Eric P., Edwards, Kathryn M., Nicholson, Maribeth R.

“…ABSTRACT Objectives: Recent Infectious Disease Society of America guidelines recommend multistep testing algorithms to diagnose Clostridioides difficile…”
Get full text

Functional biogeography as evidence of gene transfer in hypersaline microbial communities by Parnell, J Jacob, Rompato, Giovanni, Latta, 4th, Leigh C, Pfrender, Michael E, Van Nostrand, Joy D, He, Zhili, Zhou, Jizhong, Andersen, Gary, Champine, Patti, Ganesan, Balasubramanian, Weimer, Bart C

“…Horizontal gene transfer (HGT) plays a major role in speciation and evolution of bacteria and archaea by controlling gene distribution within an environment…”
Get full text

Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization by Parnell, J Jacob, Vintila, Simina, Tang, Clara, Wagner, Maggie R, Kleiner, Manuel

“…Synthetic communities (SynComs) are an invaluable tool to characterize and model plant-microbe interactions. Multimember SynComs approximate intricate…”
Get full text

Prevalence, Risk Factors, and Sequelae of Asymptomatic Clostridioides difficile Colonization in Children with Cystic Fibrosis by Reasoner, Seth A., Fazili, Irtiqa F., Bernard, Rachel, Parnell, Jacob M., Sokolow, Andrew G., Thomsen, Kelly F., Edwards, Kathryn M., Brown, Rebekah F., Nicholson, Maribeth R.

“…•The rate, risk factors, and sequelae of asymptomatic colonization by C. difficile are not well characterized in children with cystic fibrosis (CF).•Thirty-two…”
Get full text

Burkholderia xenovorans LB400 Harbors a Multi-Replicon, 9.73-Mbp Genome Shaped for Versatility by Chain, Patrick S. G., Denef, Vincent J., Konstantinidis, Konstantinos T., Vergez, Lisa M., Agulló, Loreine, Reyes, Valeria Latorre, Hauser, Loren, Córdova, Macarena, Gómez, Luis, González, Myriam, Land, Miriam, Lao, Victoria, Larimer, Frank, LiPuma, John J., Mahenthiralingam, Eshwar, Malfatti, Stephanie A., Marx, Christopher J., Parnell, J. Jacob, Ramette, Alban, Richardson, Paul, Seeger, Michael, Smith, Daryl, Spilker, Theodore, Sul, Woo Jun, Tsoi, Tamara V., Ulrich, Luke E., Zhulin, Igor B., Tiedje, James M.

“…Burkholderia xenovorans LB400 (LB400), a well studied, effective polychlorinated biphenyl-degrader, has one of the two largest known bacterial genomes and is…”
Get full text

Understanding sheep baa‐haviour: Investigating the relationship between pasture and animal grazing patterns by Parnell, Danica, Kardailsky, Igor, Parnell, Jacob, Badgery, Warwick Brabazon, Ingram, Lachlan, Zhang, Yingjun

“…Background Grasslands are the primary source of feed for grazing livestock, and as such, knowledge on how to best manage livestock and grasslands, through the…”
Get full text

Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400 by Parnell, J. Jacob, Denef, Vincent J, Park, Joonhong, Tsoi, Tamara, Tiedje, James M

“…The principal means for microbial degradation of polychlorinated biphenyls (PCBs) is through the biphenyl pathway. Although molecular aspects of the regulation…”
Get full text

Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400 by Patrauchan, Marianna A., Parnell, J. Jacob, McLeod, Michael P., Florizone, Christine, Tiedje, James M., Eltis, Lindsay D.

“…The phenylacetyl-CoA (Paa) catabolic pathway and genome-wide gene expression responses to phenylacetate catabolism were studied in the polychlorinated biphenyl…”
Get full text

Coping with Polychlorinated Biphenyl (PCB) Toxicity: Physiological and Genome-Wide Responses of Burkholderia xenovorans LB400 to PCB-Mediated Stress by Parnell, J. Jacob, Park, Joonhong, Denef, Vincent, Tsoi, Tamara, Hashsham, Syed, Quensen, John III, Tiedje, James M

“…The biodegradation of polychlorinated biphenyls (PCBs) relies on the ability of aerobic microorganisms such as Burkholderia xenovorans sp. LB400 to tolerate…”
Get full text

Key Edaphic Properties Largely Explain Temporal and Geographic Variation in Soil Microbial Communities across Four Biomes by Docherty, Kathryn M, Borton, Hannah M, Espinosa, Noelle, Gebhardt, Martha, Gil-Loaiza, Juliana, Gutknecht, Jessica L M, Maes, Patrick W, Mott, Brendon M, Parnell, John Jacob, Purdy, Gayle, Rodrigues, Pedro A P, Stanish, Lee F, Walser, Olivia N, Gallery, Rachel E

“…Soil microbial communities play a critical role in nutrient transformation and storage in all ecosystems. Quantifying the seasonal and long-term temporal…”
Get full text

Species and genotype diversity drive community and ecosystem properties in experimental microcosms by Latta, Leigh C., Baker, Michelle, Crowl, Todd, Jacob Parnell, J., Weimer, Bart, DeWald, Daryll B., Pfrender, Michael E.

“…Species diversity is important to ecosystems because of the increased probability of including species that are strong interactors and/or because…”
Get full text

Biodiversity in microbial communities: system scale patterns and mechanisms by PARNELL, J. JACOB, CROWL, TODD A., WEIMER, BART C., PFRENDER, MICHAEL E.

“…The relationship between anthropogenic impact and the maintenance of biodiversity is a fundamental question in ecology. The emphasis on the organizational…”
Get full text

Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock by Parnell, J. Jacob, Callister, Stephen J., Rompato, Giovanni, Nicora, Carrie D., Paša-Tolić, Ljiljana, Williamson, Ashley, Pfrender, Michael E.

“…Shewanellae are microbial models for environmental stress response; however, the sequential expression of mechanisms in response to stress is poorly…”
Get full text

4345 Two-step Algorithm for Clostridioides difficile is Inadequate for Differentiating Infection from Colonization in Children by Nicholson, Maribeth R, Parnell, Jacob M, Fazili, Irtiqa, Bloch, Sarah C., Lacy, D. Borden, Skaar, Eric, Edwards, Kathryn M

“…OBJECTIVES/GOALS: In 2017, new guidelines recommended multi-step algorithms for CDI diagnosis, and clinical centers rapidly implemented changes despite limited…”
Get full text

Relating perturbation magnitude to temporal gene expression in biological systems by Callister, Stephen J, Parnell, J Jacob, Pfrender, Michael E, Hashsham, Syed A

“…Most transcriptional activity is a result of environmental variability. This cause (environment) and effect (gene expression) relationship is essential to…”
Get full text

Esophageal Mucosal Impedance Patterns Discriminate Patients With Eosinophilic Esophagitis From Patients With GERD by Choksi, Yash, Lal, Pooja, Slaughter, James C., Sharda, Rohit, Parnell, Jacob, Higginbotham, Tina, Vaezi, Michael F.

“…It is a challenge to make a diagnosis of eosinophilic esophagitis (EoE) because its symptoms and histologic features overlap with those of gastroesophageal…”
Get full text

Advancing Training Objectives for Neural Document Summarisation by Parnell, Jacob Stewart

“…Document summarisation is a natural language processing (NLP) task employed to convey salient information from large documents into concise summaries. It is a…”
Get full text

238 – Nucleic Acid Amplification Followed by Enzyme Immunoassay Testing for Clostridium Difficile is Inadequate in Differentiating Infection Versus Colonization in Pediatric Patients by Nicholson, Maribeth R., Parnell, Jacob M., Fazili, Irtiqa, Bloch, Sarah C., Lacy, Dana B., Skaar, Eric P., Edwards, Kathryn

Get full text

Improving Heart Failure Management in Post-Acute and Long-Term Care: A Pilot Study by Akinjogbin, Temitope, Akinjogbin, Temitope, Parnell, Jacob M., Duggan, Mariu, Habermann, Ralf, Bell, Susan

Get full text