Search Results - "Parada, E"

High-throughput total RNA sequencing in single cells using VASA-seq by Salmen, Fredrik, De Jonghe, Joachim, Kaminski, Tomasz S., Alemany, Anna, Parada, Guillermo E., Verity-Legg, Joe, Yanagida, Ayaka, Kohler, Timo N., Battich, Nicholas, van den Brekel, Floris, Ellermann, Anna L., Arias, Alfonso Martinez, Nichols, Jennifer, Hemberg, Martin, Hollfelder, Florian, van Oudenaarden, Alexander

“…Most methods for single-cell transcriptome sequencing amplify the termini of polyadenylated transcripts, capturing only a small fraction of the total cellular…”
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Characterizing the “fungal shunt”: Parasitic fungi on diatoms affect carbon flow and bacterial communities in aquatic microbial food webs by Klawonn, Isabell, Van den Wyngaert, Silke, Parada, Alma E., Arandia-Gorostidi, Nestor, Whitehouse, Martin J., Grossart, Hans-Peter, Dekas, Anne E.

“…Microbial interactions in aquatic environments profoundly affect global biogeochemical cycles, but the role of microparasites has been largely overlooked…”
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Alternative splicing modulation by G-quadruplexes by Georgakopoulos-Soares, Ilias, Parada, Guillermo E., Wong, Hei Yuen, Medhi, Ragini, Furlan, Giulia, Munita, Roberto, Miska, Eric A., Kwok, Chun Kit, Hemberg, Martin

“…Alternative splicing is central to metazoan gene regulation, but the regulatory mechanisms are incompletely understood. Here, we show that G-quadruplex (G4)…”
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A comprehensive survey of non-canonical splice sites in the human transcriptome by Parada, Guillermo E, Munita, Roberto, Cerda, Cledi A, Gysling, Katia

“…We uncovered the diversity of non-canonical splice sites at the human transcriptome using deep transcriptome profiling. We mapped a total of 3.7 billion human…”
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SARS-CoV-2 infection in Spanish children with chronic kidney pathologies by Melgosa, M., Madrid, A., Alvárez, O., Lumbreras, J., Nieto, F., Parada, E., Perez-Beltrán, V.

“…Background There is little information about Coronavirus Disease 2019 (COVID-19) in children with underlying chronic renal pathologies. Cases report From March…”
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Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years by Cram, Jacob A, Chow, Cheryl-Emiliane T, Sachdeva, Rohan, Needham, David M, Parada, Alma E, Steele, Joshua A, Fuhrman, Jed A

“…Microbial activities that affect global oceanographic and atmospheric processes happen throughout the water column, yet the long-term ecological dynamics of…”
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Single-cell view of deep-sea microbial activity and intracommunity heterogeneity by Arandia-Gorostidi, N., Parada, A. E., Dekas, A. E.

“…Microbial activity in the deep sea is cumulatively important for global elemental cycling yet is difficult to quantify and characterize due to low cell density…”
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Remnant Growth Rate after Portal Vein Embolization Is a Good Early Predictor of Post-Hepatectomy Liver Failure by Leung, Universe, MBChB, FRACS, Simpson, Amber L., PhD, Araujo, Raphael L.C., MD, Gönen, Mithat, PhD, McAuliffe, Conor, BA, Miga, Michael I., PhD, Parada, E. Patricia, BS, Allen, Peter J., MD, FACS, D’Angelica, Michael I., MD, FACS, Kingham, T. Peter, MD, FACS, DeMatteo, Ronald P., MD, FACS, Fong, Yuman, MD, FACS, Jarnagin, William R., MD, FACS

“…Background After portal vein embolization (PVE), the future liver remnant (FLR) hypertrophies for several weeks. An early marker that predicts a low risk of…”
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Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences by Georgakopoulos-Soares, Ilias, Mouratidis, Ioannis, Parada, Guillermo E, Matharu, Navneet, Hemberg, Martin, Ahituv, Nadav

“…Abstract DNA strand asymmetries can have a major effect on several biological functions, including replication, transcription and transcription factor binding…”
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Secondary structures in RNA synthesis, splicing and translation by Georgakopoulos-Soares, Ilias, Parada, Guillermo E., Hemberg, Martin

“…[Display omitted] Even though the functional role of mRNA molecules is primarily decided by the nucleotide sequence, several properties are determined by…”
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Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight by Chow, Cheryl-Emiliane T, Sachdeva, Rohan, Cram, Jacob A, Steele, Joshua A, Needham, David M, Patel, Anand, Parada, Alma E, Fuhrman, Jed A

“…Time-series are critical to understanding long-term natural variability in the oceans. Bacterial communities in the euphotic zone were investigated for over a…”
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Texture Analysis of Preoperative CT Images for Prediction of Postoperative Hepatic Insufficiency: A Preliminary Study by Simpson, Amber L., PhD, Adams, Lauryn B., BS, Allen, Peter J., MD, FACS, D’Angelica, Michael I., MD, FACS, DeMatteo, Ronald P., MD, FACS, Fong, Yuman, MD, FACS, Kingham, T. Peter, MD, FACS, Leung, Universe, MD, Miga, Michael I., PhD, Parada, E. Patricia, BS, Jarnagin, William R., MD, FACS, Do, Richard K.G., MD, PhD

“…Background Texture analysis is a promising method of analyzing imaging data to potentially enhance diagnostic capability. This approach involves automated…”
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MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development by Parada, Guillermo E, Munita, Roberto, Georgakopoulos-Soares, Ilias, Fernandes, Hugo J R, Kedlian, Veronika R, Metzakopian, Emmanouil, Andres, Maria Estela, Miska, Eric A, Hemberg, Martin

“…Microexons, exons that are ≤ 30 nucleotides, are a highly conserved and dynamically regulated set of cassette exons. They have key roles in nervous system…”
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Microbial Community Composition in Deep‐Subsurface Reservoir Fluids Reveals Natural Interwell Connectivity by Zhang, Yuran, Dekas, Anne E., Hawkins, Adam J., Parada, Alma E., Gorbatenko, Oxana, Li, Kewen, Horne, Roland N.

“…The identification of natural fractures and the wells they connect is crucial for the development of geological reservoirs because it may have an important…”
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Delirium in hospitalized COVID-19 patients: A case series by M, Alonso-Sánchez, E, Delgado-Parada, JL, Ayuso-Mateos

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Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP by Dekas, Anne E, Parada, Alma E, Mayali, Xavier, Fuhrman, Jed A, Wollard, Jessica, Weber, Peter K, Pett-Ridge, Jennifer

“…Characterizing and quantifying metabolisms remains both a central goal and challenge for environmental microbiology. Here, we used a single-cell, multi-isotope…”
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Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota by Parada, Alma E., Mayali, Xavier, Weber, Peter K., Wollard, Jessica, Santoro, Alyson E., Fuhrman, Jed A., Pett‐Ridge, Jennifer, Dekas, Anne E.

“…Marine Group I (MGI) Thaumarchaeota were originally described as chemoautotrophic nitrifiers, but molecular and isotopic evidence suggests heterotrophic and/or…”
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Liaison psychiatry before and after the COVID-19 pandemic by Delgado-Parada, E., Alonso-Sánchez, M., Ayuso-Mateos, J.L., Robles-Camacho, M., Izquierdo, A.

“…•The COVID-19 pandemic has had a great impact on liaison psychiatry teams (LPTs).•Reasons for admission and psychiatric diagnoses have changed during the…”
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Defining line replaceable units by Parada Puig, J.E., Basten, R.J.I.

“…•We discuss the line replaceable unit (LRU) definition decision problem.•Replacement levels are selected within the indenture structure of capital assets.•We…”
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Subthreshold Concentrations of Melatonin and Galantamine Improves Pathological AD-Hallmarks in Hippocampal Organotypic Cultures by Buendia, I., Parada, E., Navarro, E., León, R., Negredo, P., Egea, J., López, M. G.

“…Melatonin is a neurohormone whose levels are significantly reduced or absent in Alzheimer’s disease (AD) patients. In these patients, acetylcholinesterase…”
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