Search Results - "Panman, Matthijs"

Guanidinium-Induced Denaturation by Breaking of Salt Bridges by Meuzelaar, Heleen, Panman, Matthijs R., Woutersen, Sander

“…Despite its wide use as a denaturant, the mechanism by which guanidinium (Gdm+) induces protein unfolding remains largely unclear. Herein, we show evidence…”
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Accelerating the Shuttling in Hydrogen-Bonded Rotaxanes: Active Role of the Axle and the End Station by Kumpulainen, Tatu, Panman, Matthijs R, Bakker, Bert H, Hilbers, Michiel, Woutersen, Sander, Brouwer, Albert M

“…The relation between the chemical structure and the mechanical behavior of molecular machines is of paramount importance for a rational design of superior…”
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On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome by Takala, Heikki, Lehtivuori, Heli K., Berntsson, Oskar, Hughes, Ashley, Nanekar, Rahul, Niebling, Stephan, Panman, Matthijs, Henry, Léocadie, Menzel, Andreas, Westenhoff, Sebastian, Ihalainen, Janne A.

“…Phytochromes are photoreceptors in plants, fungi, and various microorganisms and cycle between metastable red light–absorbing (Pr) and far-red light–absorbing…”
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The primary structural photoresponse of phytochrome proteins captured by a femtosecond X-ray laser by Claesson, Elin, Wahlgren, Weixiao Yuan, Takala, Heikki, Pandey, Suraj, Castillon, Leticia, Kuznetsova, Valentyna, Henry, Léocadie, Panman, Matthijs, Carrillo, Melissa, Kübel, Joachim, Nanekar, Rahul, Isaksson, Linnéa, Nimmrich, Amke, Cellini, Andrea, Morozov, Dmitry, Maj, Michał, Kurttila, Moona, Bosman, Robert, Nango, Eriko, Tanaka, Rie, Tanaka, Tomoyuki, Fangjia, Luo, Iwata, So, Owada, Shigeki, Moffat, Keith, Groenhof, Gerrit, Stojković, Emina A, Ihalainen, Janne A, Schmidt, Marius, Westenhoff, Sebastian

“…Phytochrome proteins control the growth, reproduction, and photosynthesis of plants, fungi, and bacteria. Light is detected by a bilin cofactor, but it remains…”
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Sequential conformational transitions and α-helical supercoiling regulate a sensor histidine kinase by Berntsson, Oskar, Diensthuber, Ralph P., Panman, Matthijs R., Björling, Alexander, Gustavsson, Emil, Hoernke, Maria, Hughes, Ashley J., Henry, Léocadie, Niebling, Stephan, Takala, Heikki, Ihalainen, Janne A., Newby, Gemma, Kerruth, Silke, Heberle, Joachim, Liebi, Marianne, Menzel, Andreas, Henning, Robert, Kosheleva, Irina, Möglich, Andreas, Westenhoff, Sebastian

“…Sensor histidine kinases are central to sensing in bacteria and in plants. They usually contain sensor, linker, and kinase modules and the structure of many of…”
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Observing the Structural Evolution in the Photodissociation of Diiodomethane with Femtosecond Solution X-Ray Scattering by Panman, Matthijs R, Biasin, Elisa, Berntsson, Oskar, Hermann, Markus, Niebling, Stephan, Hughes, Ashley J, Kübel, Joachim, Atkovska, Kalina, Gustavsson, Emil, Nimmrich, Amke, Dohn, Asmus O, Laursen, Mads, Zederkof, Diana B, Honarfar, Alireza, Tono, Kensuke, Katayama, Tetsuo, Owada, Shigeki, van Driel, Tim B, Kjaer, Kasper, Nielsen, Martin M, Davidsson, Jan, Uhlig, Jens, Haldrup, Kristoffer, Hub, Jochen S, Westenhoff, Sebastian

“…Resolving the structural dynamics of the initial steps of chemical reactions is challenging. We report the femtosecond time-resolved wide-angle x-ray…”
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Solvent-Dependent Structural Dynamics in the Ultrafast Photodissociation Reaction of Triiodide Observed with Time-Resolved X‑ray Solution Scattering by Nimmrich, Amke, Panman, Matthijs R., Berntsson, Oskar, Biasin, Elisa, Niebling, Stephan, Petersson, Jonas, Hoernke, Maria, Björling, Alexander, Gustavsson, Emil, van Driel, Tim B., Dohn, Asmus O., Laursen, Mads, Zederkof, Diana B., Tono, Kensuke, Katayama, Tetsuo, Owada, Shigeki, Nielsen, Martin M., Davidsson, Jan, Uhlig, Jens, Hub, Jochen S., Haldrup, Kristoffer, Westenhoff, Sebastian

“…Resolving the structural dynamics of bond breaking, bond formation, and solvation is required for a deeper understanding of solution-phase chemical reactions…”
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Unraveling VEALYL Amyloid Formation Using Advanced Vibrational Spectroscopy and Microscopy by Roeters, Steven J., Sawall, Mathias, Eskildsen, Carl E., Panman, Matthijs R., Tordai, Gergely, Koeman, Mike, Neymeyr, Klaus, Jansen, Jeroen, Smilde, Age K., Woutersen, Sander

“…Intermediate species are hypothesized to play an important role in the toxicity of amyloid formation, a process associated with many diseases. This process can…”
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Water lubricates hydrogen-bonded molecular machines by Panman, Matthijs R., Bakker, Bert H., den Uyl, David, Kay, Euan R., Leigh, David A., Buma, Wybren Jan, Brouwer, Albert M., Geenevasen, Jan A. J., Woutersen, Sander

“…The mechanical behaviour of molecular machines differs greatly from that of their macroscopic counterparts. This applies particularly when considering concepts…”
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Folding Dynamics of the Trp-Cage Miniprotein: Evidence for a Native-Like Intermediate from Combined Time-Resolved Vibrational Spectroscopy and Molecular Dynamics Simulations by Meuzelaar, Heleen, Marino, Kristen A, Huerta-Viga, Adriana, Panman, Matthijs R, Smeenk, Linde E. J, Kettelarij, Albert J, van Maarseveen, Jan H, Timmerman, Peter, Bolhuis, Peter G, Woutersen, Sander

“…Trp-cage is a synthetic 20-residue miniprotein which folds rapidly and spontaneously to a well-defined globular structure more typical of larger proteins. Due…”
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Time-Resolved X-Ray Solution Scattering Reveals the Structural Photoactivation of a Light-Oxygen-Voltage Photoreceptor by Berntsson, Oskar, Diensthuber, Ralph P., Panman, Matthijs R., Björling, Alexander, Hughes, Ashley J., Henry, Léocadie, Niebling, Stephan, Newby, Gemma, Liebi, Marianne, Menzel, Andreas, Henning, Robert, Kosheleva, Irina, Möglich, Andreas, Westenhoff, Sebastian

“…Light-oxygen-voltage (LOV) receptors are sensory proteins controlling a wide range of organismal adaptations in multiple kingdoms of life. Because of their…”
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Folding of a Zinc-Finger ββα-Motif Investigated Using Two-Dimensional and Time-Resolved Vibrational Spectroscopy by Meuzelaar, Heleen, Panman, Matthijs R, van Dijk, Chris N, Woutersen, Sander

“…Small proteins provide good model systems for studying the fundamental forces that control protein folding. Here, we investigate the folding dynamics of the…”
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Structural photoactivation of a full-length bacterial phytochrome by Björling, Alexander, Berntsson, Oskar, Lehtivuori, Heli, Takala, Heikki, Hughes, Ashley J, Panman, Matthijs, Hoernke, Maria, Niebling, Stephan, Henry, Léocadie, Henning, Robert, Kosheleva, Irina, Chukharev, Vladimir, Tkachenko, Nikolai V, Menzel, Andreas, Newby, Gemma, Khakhulin, Dmitry, Wulff, Michael, Ihalainen, Janne A, Westenhoff, Sebastian

“…Phytochromes are light sensor proteins found in plants, bacteria, and fungi. They function by converting a photon absorption event into a conformational signal…”
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Operation Mechanism of a Molecular Machine Revealed Using Time-Resolved Vibrational Spectroscopy by Panman, Matthijs R, Bodis, Pavol, Shaw, Daniel J, Bakker, Bert H, Newton, Arthur C, Kay, Euan R, Brouwer, Albert M, Buma, Wybren Jan, Leigh, David A, Woutersen, Sander

“…Rotaxanes comprise macrocycles that can shuttle between docking stations along an axle. We explored the nanosecond shuttling mechanism by reversing the…”
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Transient two-dimensional vibrational spectroscopy of an operating molecular machine by Panman, Matthijs R., van Dijk, Chris N., Huerta-Viga, Adriana, Sanders, Hans J., Bakker, Bert H., Leigh, David A., Brouwer, Albert M., Buma, Wybren Jan, Woutersen, Sander

“…Synthetic molecular machines are promising building blocks for future nanoscopic devices. However, the details of their mechanical behaviour are in many cases…”
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Light-induced structural changes in a monomeric bacteriophytochrome by Takala, Heikki, Niebling, Stephan, Berntsson, Oskar, Björling, Alexander, Lehtivuori, Heli, Häkkänen, Heikki, Panman, Matthijs, Gustavsson, Emil, Hoernke, Maria, Newby, Gemma, Zontone, Federico, Wulff, Michael, Menzel, Andreas, Ihalainen, Janne A., Westenhoff, Sebastian

“…Phytochromes sense red light in plants and various microorganism. Light absorption causes structural changes within the protein, which alter its biochemical…”
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The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography by Edlund, Petra, Takala, Heikki, Claesson, Elin, Henry, Léocadie, Dods, Robert, Lehtivuori, Heli, Panman, Matthijs, Pande, Kanupriya, White, Thomas, Nakane, Takanori, Berntsson, Oskar, Gustavsson, Emil, Båth, Petra, Modi, Vaibhav, Roy-Chowdhury, Shatabdi, Zook, James, Berntsen, Peter, Pandey, Suraj, Poudyal, Ishwor, Tenboer, Jason, Kupitz, Christopher, Barty, Anton, Fromme, Petra, Koralek, Jake D., Tanaka, Tomoyuki, Spence, John, Liang, Mengning, Hunter, Mark S., Boutet, Sebastien, Nango, Eriko, Moffat, Keith, Groenhof, Gerrit, Ihalainen, Janne, Stojković, Emina A., Schmidt, Marius, Westenhoff, Sebastian

“…Phytochromes are a family of photoreceptors that control light responses of plants, fungi and bacteria. A sequence of structural changes, which is not yet…”
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Time-resolved serial crystallography to track the dynamics of carbon monoxide in the active site of cytochrome c oxidase by Safari, Cecilia, Ghosh, Swagatha, Andersson, Rebecka, Johannesson, Jonatan, Båth, Petra, Uwangue, Owens, Dahl, Peter, Zoric, Doris, Sandelin, Emil, Vallejos, Adams, Nango, Eriko, Tanaka, Rie, Bosman, Robert, Börjesson, Per, Dunevall, Elin, Hammarin, Greger, Ortolani, Giorgia, Panman, Matthijs, Tanaka, Tomoyuki, Yamashita, Ayumi, Arima, Toshi, Sugahara, Michihiro, Suzuki, Mamoru, Masuda, Tetsuya, Takeda, Hanae, Yamagiwa, Raika, Oda, Kazumasa, Fukuda, Masahiro, Tosha, Takehiko, Naitow, Hisashi, Owada, Shigeki, Tono, Kensuke, Nureki, Osamu, Iwata, So, Neutze, Richard, Brändén, Gisela

“…Cytochrome oxidase (C O) is part of the respiratory chain and contributes to the electrochemical membrane gradient in mitochondria as well as in many bacteria,…”
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Photoactivation of Drosophila melanogaster cryptochrome through sequential conformational transitions by Berntsson, Oskar, Rodriguez, Ryan, Henry, Léocadie, Panman, Matthijs R, Hughes, Ashley J, Einholz, Christopher, Weber, Stefan, Ihalainen, Janne A, Henning, Robert, Kosheleva, Irina, Schleicher, Erik, Westenhoff, Sebastian

“…Cryptochromes are blue-light photoreceptor proteins, which provide input to circadian clocks. The cryptochrome from ( Cry) modulates the degradation of…”
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Amplifying vibrational circular dichroism by manipulation of the electronic manifold by Domingos, Sérgio R, Panman, Matthijs R, Bakker, Bert H, Hartl, Frantisek, Buma, Wybren J, Woutersen, Sander

“…Vibrational circular dichroism is a powerful technique to study the stereochemistry of chiral molecules, but often suffers from small signal intensities…”
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