Search Results - "Palacky, Jan"

Systematic investigation of sequence requirements for DNA i-motif formation by Školáková, Petra, Renčiuk, Daniel, Palacký, Jan, Krafčík, Daniel, Dvořáková, Zuzana, Kejnovská, Iva, Bednářová, Klára, Vorlíčková, Michaela

“…Abstract The formation of intercalated motifs (iMs) - secondary DNA structures based on hemiprotonated C.C+ pairs in suitable cytosine-rich DNA sequences, is…”
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CD Study of the G-Quadruplex Conformation by Kejnovská, Iva, Renčiuk, Daniel, Palacký, Jan, Vorlíčková, Michaela

“…Circular Dichroic (CD) spectroscopy is one of the most frequently used methods for guanine quadruplex studies and in general for studies of conformational…”
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Polymorphism of human telomeric quadruplex structure controlled by DNA concentration: a Raman study by Palacky, Jan, Vorlickova, Michaela, Kejnovska, Iva, Mojzes, Peter

“…DNA concentration has been recently suggested to be the reason why different arrangements are revealed for K(+)-stabilized human telomere quadruplexes by…”
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Does Raman spectroscopy recognize different G‐quadruplex arrangements? by Palacký, Jan, Mojzeš, Peter, Kejnovská, Iva, Vorlíčková, Michaela

“…In this work, we demonstrate the underused potential of Raman spectroscopy in detecting formation of DNA G‐quadruplex (G4) and differentiating between various…”
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DNA i-motif formation at neutral pH is driven by kinetic partitioning by Školáková, Petra, Gajarský, Martin, Palacký, Jan, Šubert, Denis, Renčiuk, Daniel, Trantírek, Lukáš, Mergny, Jean-Louis, Vorlíčková, Michaela

“…Abstract Cytosine-rich DNA regions can form four-stranded structures based on hemi-protonated C.C+ pairs, called i-motifs (iMs). Using CD, UV absorption, NMR…”
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DNA i‐motif formation at physiological pH revealed by Raman spectroscopy by Palacký, Jan, Školáková, Petra, Renčiuk, Daniel, Mojzeš, Peter, Rossi, Barbara, Matroodi, Fatima, Vorlíčková, Michaela

“…The intercalated motif (iM) is a four‐stranded structure consisting of two parallel homoduplexes formed by hemiprotonated C.C+ pairs and intercalated…”
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G‐Quadruplex Formation by DNA Sequences Deficient in Guanines: Two Tetrad Parallel Quadruplexes Do Not Fold Intramolecularly by Kejnovská, Iva, Stadlbauer, Petr, Trantírek, Lukáš, Renčiuk, Daniel, Gajarský, Martin, Krafčík, Daniel, Palacký, Jan, Bednářová, Klára, Šponer, Jiří, Mergny, Jean‐Louis, Vorlíčková, Michaela

“…Guanine quadruplexes (G4s) are noncanonical forms of nucleic acids that are frequently found in genomes. The stability of G4s depends, among other factors, on…”
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Influence of Silicate Rock Glass Compositions on the Efficacy of Prebiotic RNA Polymerization Reactions: The Case of 3’,5’ Cyclic Guanosine Monophosphate by Šponer, Judit E., Kloužek, Jaroslav, Výravský, Jakub, Wunnava, Sreekar, Scheu, Bettina, Braun, Dieter, Mojzsis, Stephen J., Palacký, Jan, Vorlíčková, Michaela, Šponer, Jiří, Matyášek, Roman, Kovařík, Aleš

“…Silicate glasses are ubiquitous on terrestrial planets wherever molten rock – generated by volcanism or impacts – is quenched by air or water. Hence, they…”
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Pressure effects reveal that changes in the redox states of the heme iron complexes in the sensor domains of two heme‐based oxygen sensor proteins, EcDOS and YddV, have profound effects on their flexibility by Anzenbacher, Pavel, Marchal, Stéphane, Palacký, Jan, Anzenbacherová, Eva, Domaschke, Thomas, Lange, Reinhard, Shimizu, Toru, Kitanishi, Kenichi, Stranava, Martin, Stiborová, Marie, Martinkova, Marketa

“…The catalytic activity of a heme‐based oxygen sensor phosphodiesterase from Escherichia coli (EcDOS) towards cyclic diGMP is regulated by the redox state of…”
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Raman Microspectroscopy of the Yeast Vacuoles by Mojzeš, Peter, Hrušková-Heidingsfeldová, Olga, Bauerová, Václava, Palacký, Jan, Bednárová, Lucie, Pichová, Iva

“…In the present work, real ability of a confocal Raman microspectroscopy to monitor chemical composition of the vacuoles within living yeast cells was…”
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SVD-based method for intensity normalization, background correction and solvent subtraction in Raman spectroscopy exploiting the properties of water stretching vibrations by Palacký, Jan, Mojzeš, Peter, Bok, Jiří

“…A semiautomated method combining intensity normalization with effective elimination of the solvent signal and non‐Raman background is presented for Raman…”
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Analysis of composite nanofibrous layers by confocal Raman microscopy by Kotzianova, Adela, Rebicek, Jiri, Mojzes, Peter, Pokorny, Marek, Palacky, Jan, Hrbac, Jan, Velebny, Vladimir

“…A method for the determination of nanofibrous mats chemical composition based on Raman spectroscopy and singular value decomposition is presented. Two…”
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Pressure effects reveal that changes in the redox states of the heme iron complexes in the sensor domains of two heme‐based oxygen sensor proteins, Ec DOS and YddV, have profound effects on their flexibility by Anzenbacher, Pavel, Marchal, Stéphane, Palacký, Jan, Anzenbacherová, Eva, Domaschke, Thomas, Lange, Reinhard, Shimizu, Toru, Kitanishi, Kenichi, Stranava, Martin, Stiborová, Marie, Martinkova, Marketa

“…The catalytic activity of a heme‐based oxygen sensor phosphodiesterase from Escherichia coli ( Ec DOS ) towards cyclic di GMP is regulated by the redox state…”
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