Search Results - "PURVINE, Samuel O"

Multiomics resolution of molecular events during a day in the life of Chlamydomonas by Strenkert, Daniela, Schmollinger, Stefan, Gallaher, Sean D., Salomé, Patrice A., Purvine, Samuel O., Nicora, Carrie D., Mettler-Altmann, Tabea, Soubeyrand, Eric, Weber, Andreas P. M., Lipton, Mary S., Basset, Gilles J., Merchant, Sabeeha S.

“…The unicellular green alga Chlamydomonas reinhardtii displays metabolic flexibility in response to a changing environment. We analyzed expression patterns of…”
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Intracellular pathways for lignin catabolism in white-rot fungi by del Cerro, Carlos, Erickson, Erika, Dong, Tao, Wong, Allison R., Eder, Elizabeth K., Purvine, Samuel O., Mitchell, Hugh D., Weitz, Karl K., Markillie, Lye Meng, Burnet, Meagan C., Hoyt, David W., Chu, Rosalie K., Cheng, Jan-Fang, Ramirez, Kelsey J., Katahira, Rui, Xiong, Wei, Himmel, Michael E., Subramanian, Venkataramanan, Linger, Jeffrey G., Salvachúa, Davinia

“…Lignin is a biopolymer found in plant cell walls that accounts for 30% of the organic carbon in the biosphere. White-rot fungi (WRF) are considered the most…”
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Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes by Solomon, Kevin V., Haitjema, Charles H., Henske, John K., Gilmore, Sean P., Borges-Rivera, Diego, Lipzen, Anna, Brewer, Heather M., Purvine, Samuel O., Wright, Aaron T., Theodorou, Michael K., Grigoriev, Igor V., Regev, Aviv, Thompson, Dawn A., O'Malley, Michelle A.

“…The fungal kingdom is the source of almost all industrial enzymes in use for lignocellulose bioprocessing. We developed a systems-level approach that…”
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High‐throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates by Gallaher, Sean D., Fitz‐Gibbon, Sorel T., Strenkert, Daniela, Purvine, Samuel O., Pellegrini, Matteo, Merchant, Sabeeha S.

“…Summary Chlamydomonas reinhardtii is a unicellular chlorophyte alga that is widely studied as a reference organism for understanding photosynthesis, sensory…”
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Decrypting bacterial polyphenol metabolism in an anoxic wetland soil by McGivern, Bridget B., Tfaily, Malak M., Borton, Mikayla A., Kosina, Suzanne M., Daly, Rebecca A., Nicora, Carrie D., Purvine, Samuel O., Wong, Allison R., Lipton, Mary S., Hoyt, David W., Northen, Trent R., Hagerman, Ann E., Wrighton, Kelly C.

“…Microorganisms play vital roles in modulating organic matter decomposition and nutrient cycling in soil ecosystems. The enzyme latch paradigm posits microbial…”
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The Specific Carbohydrate Diet and Diet Modification as Induction Therapy for Pediatric Crohn's Disease: A Randomized Diet Controlled Trial by Suskind, David L, Lee, Dale, Kim, Young-Mo, Wahbeh, Ghassan, Singh, Namita, Braly, Kimberly, Nuding, Mason, Nicora, Carrie D, Purvine, Samuel O, Lipton, Mary S, Jansson, Janet K, Nelson, William C

“…Crohn's disease (CD) is a chronic inflammatory intestinal disorder associated with intestinal dysbiosis. Diet modulates the intestinal microbiome and therefore…”
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Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models by Palsson, Bernhard Ø, Lewis, Nathan E, Hixson, Kim K, Conrad, Tom M, Lerman, Joshua A, Charusanti, Pep, Polpitiya, Ashoka D, Adkins, Joshua N, Schramm, Gunnar, Purvine, Samuel O, Lopez-Ferrer, Daniel, Weitz, Karl K, Eils, Roland, König, Rainer, Smith, Richard D

“…After hundreds of generations of adaptive evolution at exponential growth, Escherichia coli grows as predicted using flux balance analysis (FBA) on…”
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Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets by Alfaro, Joshua F, Gong, Cheng-Xin, Monroe, Matthew E, Aldrich, Joshua T, Clauss, Therese R. W, Purvine, Samuel O, Wang, Zihao, Camp, David G. II, Shabanowitz, Jeffrey, Stanley, Pamela, Hart, Gerald W, Hunt, Donald F, Yang, Feng, Smith, Richard D

“…O-linked N-acetylglucosamine (O-GlcNAc) is a reversible posttranslational modification of Ser and Thr residues on cytosolic and nuclear proteins of higher…”
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Widespread polycistronic gene expression in green algae by Gallaher, Sean D., Craig, Rory J., Ganesan, Iniyan, Purvine, Samuel O., McCorkle, Sean R., Grimwood, Jane, Strenkert, Daniela, Davidi, Lital, Roth, Melissa S., Jeffers, Tim L., Lipton, Mary S., Niyogi, Krishna K., Schmutz, Jeremy, Theg, Steven M., Blaby-Haas, Crysten E., Merchant, Sabeeha S.

“…Polycistronic gene expression, common in prokaryotes, was thought to be extremely rare in eukaryotes. The development of long-read sequencing of full-length…”
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Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis by Jeffers, Tim L., Purvine, Samuel O., Nicora, Carrie D., McCombs, Ryan, Upadhyaya, Shivani, Stroumza, Adrien, Whang, Ken, Gallaher, Sean D., Dohnalkova, Alice, Merchant, Sabeeha S., Lipton, Mary, Niyogi, Krishna K., Roth, Melissa S.

“…Energy status and nutrients regulate photosynthetic protein expression. The unicellular green alga Chromochloris zofingiensis switches off photosynthesis in…”
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Establishing the proteome of normal human cerebrospinal fluid by Schutzer, Steven E, Liu, Tao, Natelson, Benjamin H, Angel, Thomas E, Schepmoes, Athena A, Purvine, Samuel O, Hixson, Kim K, Lipton, Mary S, Camp, David G, Coyle, Patricia K, Smith, Richard D, Bergquist, Jonas

“…Knowledge of the entire protein content, the proteome, of normal human cerebrospinal fluid (CSF) would enable insights into neurologic and psychiatric…”
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Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis by Warshan, Denis, Espinoza, Josh L, Stuart, Rhona K, Richter, R Alexander, Kim, Sea-Yong, Shapiro, Nicole, Woyke, Tanja, C Kyrpides, Nikos, Barry, Kerrie, Singan, Vasanth, Lindquist, Erika, Ansong, Charles, Purvine, Samuel O, M Brewer, Heather, Weyman, Philip D, Dupont, Christopher L, Rasmussen, Ulla

“…Dinitrogen (N 2 )-fixation by cyanobacteria in symbiosis with feathermosses is the primary pathway of biological nitrogen (N) input into boreal forests…”
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Functional Genomics, Transcriptomics, and Proteomics Reveal Distinct Combat Strategies Between Lineages of Wood-Degrading Fungi With Redundant Wood Decay Mechanisms by Presley, Gerald N., Zhang, Jiwei, Purvine, Samuel O., Schilling, Jonathan S.

“…Wood-degrading fungi vary in their strategies for deconstructing wood, and their competitive successes shape the rate and fate of carbon released from wood,…”
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Automated Genome Mining of Ribosomal Peptide Natural Products by Mohimani, Hosein, Kersten, Roland D, Liu, Wei-Ting, Wang, Mingxun, Purvine, Samuel O, Wu, Si, Brewer, Heather M, Pasa-Tolic, Ljiljana, Bandeira, Nuno, Moore, Bradley S, Pevzner, Pavel A, Dorrestein, Pieter C

“…Ribosomally synthesized and posttranslationally modified peptides (RiPPs), especially from microbial sources, are a large group of bioactive natural products…”
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Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition by Zeiner, Carolyn A, Purvine, Samuel O, Zink, Erika, Wu, Si, Paša-Tolić, Ljiljana, Chaput, Dominique L, Santelli, Cara M, Hansel, Colleen M

“…Manganese (Mn) oxides are among the strongest oxidants and sorbents in the environment, and Mn(II) oxidation to Mn(III/IV) (hydr)oxides includes both abiotic…”
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Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi by Zeiner, Carolyn A, Purvine, Samuel O, Zink, Erika M, Paša-Tolić, Ljiljana, Chaput, Dominique L, Haridas, Sajeet, Wu, Si, LaButti, Kurt, Grigoriev, Igor V, Henrissat, Bernard, Santelli, Cara M, Hansel, Colleen M

“…Fungal secretomes contain a wide range of hydrolytic and oxidative enzymes, including cellulases, hemicellulases, pectinases, and lignin-degrading accessory…”
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MALDI-Mass Spectrometric Imaging Revealing Hypoxia-Driven Lipids and Proteins in a Breast Tumor Model by Jiang, Lu, Chughtai, Kamila, Purvine, Samuel O, Bhujwalla, Zaver M, Raman, Venu, Paša-Tolić, Ljiljana, Heeren, Ron M. A, Glunde, Kristine

“…Hypoxic areas are a common feature of rapidly growing malignant tumors and their metastases and are typically spatially heterogeneous. Hypoxia has a strong…”
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A parts list for fungal cellulosomes revealed by comparative genomics by Haitjema, Charles H., Gilmore, Sean P., Henske, John K., Solomon, Kevin V., de Groot, Randall, Kuo, Alan, Mondo, Stephen J., Salamov, Asaf A., LaButti, Kurt, Zhao, Zhiying, Chiniquy, Jennifer, Barry, Kerrie, Brewer, Heather M., Purvine, Samuel O., Wright, Aaron T., Hainaut, Matthieu, Boxma, Brigitte, van Alen, Theo, Hackstein, Johannes H. P., Henrissat, Bernard, Baker, Scott E., Grigoriev, Igor V., O'Malley, Michelle A.

“…Cellulosomes are large, multiprotein complexes that tether plant biomass-degrading enzymes together for improved hydrolysis 1 . These complexes were first…”
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Dichomitus squalens partially tailors its molecular responses to the composition of solid wood by Daly, Paul, López, Sara Casado, Peng, Mao, Lancefield, Christopher S., Purvine, Samuel O., Kim, Young‐Mo, Zink, Erika M., Dohnalkova, Alice, Singan, Vasanth R., Lipzen, Anna, Dilworth, David, Wang, Mei, Ng, Vivian, Robinson, Errol, Orr, Galya, Baker, Scott E., Bruijnincx, Pieter C. A., Hildén, Kristiina S., Grigoriev, Igor V., Mäkelä, Miia R., de Vries, Ronald P.

“…Summary White‐rot fungi, such as Dichomitus squalens, degrade all wood components and inhabit mixed‐wood forests containing both soft‐ and hardwood species. In…”
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Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism by Tisoncik-Go, Jennifer, Gasper, David J., Kyle, Jennifer E., Eisfeld, Amie J., Selinger, Christian, Hatta, Masato, Morrison, Juliet, Korth, Marcus J., Zink, Erika M., Kim, Young-Mo, Schepmoes, Athena A., Nicora, Carrie D., Purvine, Samuel O., Weitz, Karl K., Peng, Xinxia, Green, Richard R., Tilton, Susan C., Webb-Robertson, Bobbie-Jo, Waters, Katrina M., Metz, Thomas O., Smith, Richard D., Kawaoka, Yoshihiro, Suresh, M., Josset, Laurence, Katze, Michael G.

“…Pandemic influenza viruses modulate proinflammatory responses that can lead to immunopathogenesis. We present an extensive and systematic profiling of lipids,…”
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