Search Results - "PLUNKETT, Guy"

Emergent Properties of Reduced-Genome Escherichia coli by Pósfai, György, Plunkett, Guy III, Fehér, Tamás, Frisch, David, Keil, Günther M, Umenhoffer, Kinga, Kolisnychenko, Vitaliy, Stahl, Buffy, Sharma, Shamik S, de Arruda, Monika, Burland, Valerie, Harcum, Sarah W, Blattner, Frederick R

“…With the use of synthetic biology, we reduced the Escherichia coli K-12 genome by making planned, precise deletions. The multiple-deletion series (MDS)…”
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The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse by DURFEE, Tim, NELSON, Richard, GIBBS, Richard A, CSÖRGO, Balint, POSFAI, György, WEINSTOCK, George M, BLATTNER, Frederick R, BALDWIN, Schuyler, PLUNKETT, Guy, BURLAND, Valerie, MAU, Bob, PETROSINO, Joseph F, XIANG QIN, MUZNY, Donna M, AYELE, Mulu

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Genome of Bacteriophage P1 by ŁOBOCKA, Malgorzata B, ROSE, Debra J, PLUNKETT, Guy III, RUSIN, Marek, SAMOJEDNY, Arkadiusz, LEHNHERR, Hansjörg, YARMOLINSKY, Michael B, BLATTNER, Frederick R

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The Enterobacterium Trabulsiella odontotermitis Presents Novel Adaptations Related to Its Association with Fungus-Growing Termites by Sapountzis, Panagiotis, Gruntjes, Thijs, Otani, Saria, Estevez, James, da Costa, Rafael R, Plunkett, 3rd, Guy, Perna, Nicole T, Poulsen, Michael

“…Fungus-growing termites rely on symbiotic microorganisms to help break down plant material and to obtain nutrients. Their fungal cultivar, Termitomyces, is the…”
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Genome of Enterobacteriophage Lula/phi80 and Insights into Its Ability To Spread in the Laboratory Environment by ROTMAN, Ella, KOUZMINOVA, Elena, PLUNKETT, Guy, KUZMINOV, Andrei

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Comparative Genomics of Salmonella enterica Serovar Typhi Strains Ty2 and CT18 by Deng, Wen, Liou, Shian-Ren, Plunkett, 3rd, Guy, Mayhew, George F, Rose, Debra J, Burland, Valerie, Kodoyianni, Voula, Schwartz, David C, Blattner, Frederick R

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Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 by Perna, Nicole T, Plunkett, Guy, Burland, Valerie, Mau, Bob, Glasner, Jeremy D, Rose, Debra J, Mayhew, George F, Evans, Peter S, Gregor, Jason, Kirkpatrick, Heather A, Pósfai, György, Hackett, Jeremiah, Klink, Sara, Boutin, Adam, Shao, Ying, Miller, Leslie, Grotbeck, Erik J, Davis, N. Wayne, Lim, Alex, Dimalanta, Eileen T, Potamousis, Konstantinos D, Apodaca, Jennifer, Anantharaman, Thomas S, Lin, Jieyi, Yen, Galex, Schwartz, David C, Welch, Rodney A, Blattner, Frederick R

“…The bacterium Escherichia coli O157:H7 is a worldwide threat to public health and has been implicated in many outbreaks of haemorrhagic colitis, some of which…”
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Genome Sequence of Yersinia pestis KIM by Deng, Wen, Burland, Valerie, Plunkett, 3rd, Guy, Boutin, Adam, Mayhew, George F, Liss, Paul, Perna, Nicole T, Rose, Debra J, Mau, Bob, Zhou, Shiguo, Schwartz, David C, Fetherston, Jaqueline D, Lindler, Luther E, Brubaker, Robert R, Plano, Gregory V, Straley, Susan C, McDonough, Kathleen A, Nilles, Matthew L, Matson, Jyl S, Blattner, Frederick R, Perry, Robert D

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The Complete Genome Sequence of Escherichia coli K-12 by Blattner, Frederick R., Plunkett, Guy, Bloch, Craig A., Perna, Nicole T., Burland, Valerie, Riley, Monica, Collado-Vides, Julio, Glasner, Jeremy D., Rode, Christopher K., Mayhew, George F., Gregor, Jason, Davis, Nelson Wayne, Kirkpatrick, Heather A., Goeden, Michael A., Rose, Debra J., Mau, Bob, Shao, Ying

“…The 4,639,221-base pair sequence of Escherichia coli K-12 is presented. Of 4288 protein-coding genes annotated, 38 percent have no attributed function…”
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Engineering a reduced Escherichia coli genome by Kolisnychenko, Vitaliy, Plunkett, 3rd, Guy, Herring, Christopher D, Fehér, Tamás, Pósfai, János, Blattner, Frederick R, Pósfai, György

“…Our goal is to construct an improved Escherichia coli to serve both as a better model organism and as a more useful technological tool for genome science. We…”
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Escherichia coli K1-Specific Bacteriophage CUS-3 Distribution and Function in Phase-Variable Capsular Polysialic Acid O Acetylation by King, Michael R, Vimr, Ross P, Steenbergen, Susan M, Spanjaard, Lodewijk, Plunkett, 3rd, Guy, Blattner, Frederick R, Vimr, Eric R

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Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens by Zaremba, Sam, Ramos-Santacruz, Mila, Hampton, Thomas, Shetty, Panna, Fedorko, Joel, Whitmore, Jon, Greene, John M, Perna, Nicole T, Glasner, Jeremy D, Plunkett, 3rd, Guy, Shaker, Matthew, Pot, David

“…The Enteropathogen Resource Integration Center (ERIC; http://www.ericbrc.org) has a goal of providing bioinformatics support for the scientific community…”
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ASAP, a systematic annotation package for community analysis of genomes by Glasner, Jeremy D., Liss, Paul, Plunkett III, Guy, Darling, Aaron, Prasad, Tejasvini, Rusch, Michael, Byrnes, Alexis, Gilson, Michael, Biehl, Bryan, Blattner, Frederick R., Perna, Nicole T.

“…ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute…”
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Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7: Shiga toxin as a phage late-gene product by Plunkett, 3rd, G, Rose, D J, Durfee, T J, Blattner, F R

“…Lysogenic bacteriophages are major vehicles for the transfer of genetic information between bacteria, including pathogenicity and/or virulence determinants. In…”
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ASAP: a resource for annotating, curating, comparing, and disseminating genomic data by Glasner, Jeremy D, Rusch, Michael, Liss, Paul, Plunkett, Guy, Cabot, Eric L, Darling, Aaron, Anderson, Bradley D, Infield-Harm, Paul, Gilson, Michael C, Perna, Nicole T

“…ASAP is a comprehensive web-based system for community genome annotation and analysis. ASAP is being used for a large-scale effort to augment and curate…”
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Escherichia coli K-12: a cooperatively developed annotation snapshot—2005 by Riley, Monica, Abe, Takashi, Arnaud, Martha B., Berlyn, Mary K.B., Blattner, Frederick R., Chaudhuri, Roy R., Glasner, Jeremy D., Horiuchi, Takashi, Keseler, Ingrid M., Kosuge, Takehide, Mori, Hirotada, Perna, Nicole T., Plunkett, Guy, Rudd, Kenneth E., Serres, Margrethe H., Thomas, Gavin H., Thomson, Nicholas R., Wishart, David, Wanner, Barry L.

“…The goal of this group project has been to coordinate and bring up-to-date information on all genes of Escherichia coli K-12. Annotation of the genome of an…”
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Identification and Characterization of Escherichia coli RS218–Derived Islands in the Pathogenesis of E. coli Meningitis by Xie, Yi, Kolisnychenko, Vitaliy, Paul-Satyaseela, Maneesh, Elliott, Simon, Parthasarathy, Geetha, Yao, Yufeng, Plunkett III, Guy, Blattner, Frederick R., Kim, Kwang Sik

“…BackgroundEscherichia coli K1 is the most common gram-negative bacterium causing neonatal meningitis, but the mechanisms by which E. coli K1 causes meningitis…”
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Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria by Glasner, Jeremy D, Plunkett, Guy III, Anderson, Bradley D, Baumler, David J, Biehl, Bryan S, Burland, Valerie, Cabot, Eric L, Darling, Aaron E, Mau, Bob, Neeno-Eckwall, Eric C, Pot, David, Qiu, Yu, Rissman, Anna I, Worzella, Sara, Zaremba, Sam, Fedorko, Joel, Hampton, Tom, Liss, Paul, Rusch, Michael, Shaker, Matthew, Shaull, Lorie, Shetty, Panna, Thotakura, Silpa, Whitmore, Jon, Blattner, Frederick R, Greene, John M, Perna, Nicole T

“…ERIC, the Enteropathogen Resource Integration Center (www.ericbrc.org), is a new web portal serving as a rich source of information about enterobacteria on the…”
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Analysis of the Escherichia coli Genome: DNA Sequence of the Region from 84.5 to 86.5 Minutes by Daniels, Donna L., Plunkett, Guy, Burland, Valerie, Blattner, Frederick R.

“…The DNA sequence of 91.4 kilobases of the Escherichia coli K-12 genome, spanning the region between rrnC at 84.5 minutes and rrnA at 86.5 minutes on the…”
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A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease by Greene, John M, Plunkett, 3rd, Guy, Burland, Valerie, Glasner, Jeremy, Cabot, Eric, Anderson, Brad, Neeno-Eckwall, Eric, Qiu, Yu, Mau, Bob, Rusch, Michael, Liss, Paul, Hampton, Thomas, Pot, David, Shaker, Matthew, Shaull, Lorie, Shetty, Panna, Shi, Chuan, Whitmore, Jon, Wong, Mary, Zaremba, Sam, Blattner, Frederick R, Perna, Nicole T

“…ERIC (Enteropathogen Resource Information Center) is one of the National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Centers…”
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