Search Results - "PERNA, N. T"

Extensive Mosaic Structure Revealed by the Complete Genome Sequence of Uropathogenic Escherichia coli by Welch, R. A., Burland, V., Plunkett, G., Redford, P., Roesch, P., Rasko, D., Buckles, E. L., S.-R. Liou, Boutin, A., Hackett, J., Stroud, D., Mayhew, G. F., Rose, D. J., Zhou, S., Schwartz, D. C., Perna, N. T., Mobley, H. L. T., Donnenberg, M. S., Blattner, F. R.

“…We present the complete genome sequence of uropathogenic Escherichia coli, strain CFT073. A three-way genome comparison of the CFT073, enterohemorrhagic E…”
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Complete Genome Sequence of the Plant Pathogen Erwinia amylovora Strain ATCC 49946 by SEBAIHIA, M, BOCSANCZY, A. M, PARKHILL, J, BEER, S. V, BIEHL, B. S, QUAIL, M. A, PERNA, N. T, GLASNER, J. D, DECLERCK, G. A, CARTINHOUR, S, SCHNEIDER, D. J, BENTLEY, S. D

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Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T by WEI, J, GOLDBERG, M. B, MAU, B, PERNA, N. T, PAYNE, S. M, RUNYEN-JANECKY, L. J, ZHOU, S, SCHWARTZ, D. C, BLATTNER, F. R, BURLAND, V, VENKATESAN, M. M, DENG, W, FOURNIER, G, MAYHEW, G. F, PLUNKETT, G. III, ROSE, D. J, DARLING, A

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Niche-Specificity and the Variable Fraction of the Pectobacterium Pan-Genome by Glasner, J.D, Marquez-Villavicencio, M, Kim, H.S, Jahn, C.E, Ma, B, Biehl, B.S, Rissman, A.I, Mole, B, Yi, X, Yang, C.H, Dangl, J.L, Grant, S.R, Perna, N.T, Charkowski, A.O

“…We compare genome sequences of three closely related soft-rot pathogens that vary in host range and geographical distribution to identify genetic differences…”
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The Complete Genome Sequence of Escherichia coli K-12 by Blattner, Frederick R., Plunkett, Guy, Bloch, Craig A., Perna, Nicole T., Burland, Valerie, Riley, Monica, Collado-Vides, Julio, Glasner, Jeremy D., Rode, Christopher K., Mayhew, George F., Gregor, Jason, Davis, Nelson Wayne, Kirkpatrick, Heather A., Goeden, Michael A., Rose, Debra J., Mau, Bob, Shao, Ying

“…The 4,639,221-base pair sequence of Escherichia coli K-12 is presented. Of 4288 protein-coding genes annotated, 38 percent have no attributed function…”
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Molecular Evolution of a Pathogenicity Island from Enterohemorrhagic Escherichia coli O157:H7 by PERNA, N. T, MAYHEW, G. F, POSFAI, G, ELLIOTT, S, DONNENBERG, M. S, KAPER, J. B, BLATTNER, F. R

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A Genomic Sample Sequence of the Entomopathogenic Bacterium Photorhabdus luminescens W14: Potential Implications for Virulence by FFRENCH-CONSTANT, R. H, WATERFIELD, N, BURLAND, V, PERNA, N. T, DABORN, P. J, BOWEN, D, BLATTNER, F. R

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Mauve: multiple alignment of conserved genomic sequence with rearrangements by Darling, Aaron C E, Mau, Bob, Blattner, Frederick R, Perna, Nicole T

“…As genomes evolve, they undergo large-scale evolutionary processes that present a challenge to sequence comparison not posed by short sequences. Recombination…”
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Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 by Perna, Nicole T, Plunkett, Guy, Burland, Valerie, Mau, Bob, Glasner, Jeremy D, Rose, Debra J, Mayhew, George F, Evans, Peter S, Gregor, Jason, Kirkpatrick, Heather A, Pósfai, György, Hackett, Jeremiah, Klink, Sara, Boutin, Adam, Shao, Ying, Miller, Leslie, Grotbeck, Erik J, Davis, N. Wayne, Lim, Alex, Dimalanta, Eileen T, Potamousis, Konstantinos D, Apodaca, Jennifer, Anantharaman, Thomas S, Lin, Jieyi, Yen, Galex, Schwartz, David C, Welch, Rodney A, Blattner, Frederick R

“…The bacterium Escherichia coli O157:H7 is a worldwide threat to public health and has been implicated in many outbreaks of haemorrhagic colitis, some of which…”
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Genome Sequence of Yersinia pestis KIM by Deng, Wen, Burland, Valerie, Plunkett, 3rd, Guy, Boutin, Adam, Mayhew, George F, Liss, Paul, Perna, Nicole T, Rose, Debra J, Mau, Bob, Zhou, Shiguo, Schwartz, David C, Fetherston, Jaqueline D, Lindler, Luther E, Brubaker, Robert R, Plano, Gregory V, Straley, Susan C, McDonough, Kathleen A, Nilles, Matthew L, Matson, Jyl S, Blattner, Frederick R, Perry, Robert D

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Alu Insertion Polymorphism: A New Type of Marker for Human Population Studies by PERNA, NICOLE T., BATZER, MARK A., DEININGER, PRESCOTT L., STONEKING, MARK

“…A PCR-based method was used to screen 462 individuals from Japan, Papua New Guinea, Indonesia, and Australia for an Alu family insertion polymorphism. The…”
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ASAP, a systematic annotation package for community analysis of genomes by Glasner, Jeremy D., Liss, Paul, Plunkett III, Guy, Darling, Aaron, Prasad, Tejasvini, Rusch, Michael, Byrnes, Alexis, Gilson, Michael, Biehl, Bryan, Blattner, Frederick R., Perna, Nicole T.

“…ASAP (a systematic annotation package for community analysis of genomes) is a relational database and web interface developed to store, update and distribute…”
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The complete DNA sequence and analysis of the large virulence plasmid of Escherichia coli O157:H7 by Burland, Valerie, Shao, Ying, Perna, Nicole T., Plunkett, Guy, Blattner, Frederick R., Sofia, Heidi J.

“…The complete DNA sequence of pO157, the large virulence plasmid of EHEC strain O157:H7 EDL 933, is presented. The 92 kb F-like plasmid is composed of segments…”
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Characterization of Cah, a calcium‐binding and heat‐extractable autotransporter protein of enterohaemorrhagic Escherichia coli by Torres, Alfredo G., Perna, Nicole T., Burland, Valerie, Ruknudin, Abdul, Blattner, Fred R., Kaper, James B.

“…Summary We have identified and characterized a protein of enterohaemorrhagic Escherichia coli (EHEC) serotype O157:H7 that shares homology with antigen 43 and…”
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Genomic Variability of O Islands Encoding Tellurite Resistance in Enterohemorrhagic Escherichia coli O157:H7 Isolates by Taylor, Diane E, Rooker, Michelle, Keelan, Monika, Ng, Lai-King, Martin, Irene, Perna, Nicole T, Burland, N T Valerie, Blattner, Fredrick R

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Genome-wide identification of plant-upregulated genes of Erwinia chrysanthemi 3937 using a GFP-based IVET leaf array by Yang, S, Perna, N.T, Cooksey, D.A, Okinaka, Y, Lindow, S.E, Ibekwe, A.M, Keen, N.T, Yang, C.H

“…A green fluorescent protein-based in vivo expression technology leaf array was used to identify genes in Erwinia chrysanthemi 3937 that were specifically…”
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Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria by Glasner, Jeremy D, Plunkett, Guy III, Anderson, Bradley D, Baumler, David J, Biehl, Bryan S, Burland, Valerie, Cabot, Eric L, Darling, Aaron E, Mau, Bob, Neeno-Eckwall, Eric C, Pot, David, Qiu, Yu, Rissman, Anna I, Worzella, Sara, Zaremba, Sam, Fedorko, Joel, Hampton, Tom, Liss, Paul, Rusch, Michael, Shaker, Matthew, Shaull, Lorie, Shetty, Panna, Thotakura, Silpa, Whitmore, Jon, Blattner, Frederick R, Greene, John M, Perna, Nicole T

“…ERIC, the Enteropathogen Resource Integration Center (www.ericbrc.org), is a new web portal serving as a rich source of information about enterobacteria on the…”
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hrp genes of Erwinia chrysanthemi 3937 are important virulence factors by YANG, Ching-Hong, GAVILANES-RUIZ, Marina, OKINAKA, Yasushi, VEDEL, Regine, BERTHUY, Isabelle, BOCCARA, Martine, CHEN, Jason Wei-Ta, PERNA, Nicole T, KEEN, Noel T

“…We developed improved virulence assays for Erwinia chrysanthemi 3937 on African violet varieties and devised a new method for the construction of precise…”
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Microarray profiling of Erwinia chrysanthemi 3937 genes that are regulated during plant infection by Okinaka, Yasushi, Yang, Ching-Hong, Perna, Nicole T, Keen, Noel T

“…Microarray technology was used to identify genes in Erwinia chrysanthemi 3937 that are specifically up- or down-regulated in a plant host compared with growth…”
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GRIL: genome rearrangement and inversion locator by Darling, Aaron E., Mau, Bob, Blattner, Frederick R., Perna, Nicole T.

“…GRIL is a tool to automatically identify collinear regions in a set of bacterial-size genome sequences. GRIL uses three basic steps. First, regions of high…”
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