Search Results - "PEPPER, ALAN E."

De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis by Ryan, Darcie E, Pepper, Alan E, Campbell, Lisa

“…Karenia brevis is a harmful algal species that blooms in the Gulf of Mexico and produces brevetoxins that cause neurotoxic shellfish poisoning. Elevated…”
Get full text

QTL mapping for flowering-time and photoperiod insensitivity of cotton Gossypium darwinii Watt by Kushanov, Fakhriddin N, Buriev, Zabardast T, Shermatov, Shukhrat E, Turaev, Ozod S, Norov, Tokhir M, Pepper, Alan E, Saha, Sukumar, Ulloa, Mauricio, Yu, John Z, Jenkins, Johnie N, Abdukarimov, Abdusattor, Abdurakhmonov, Ibrokhim Y

“…Most wild and semi-wild species of the genus Gossypium are exhibit photoperiod-sensitive flowering. The wild germplasm cotton is a valuable source of genes for…”
Get full text

Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm by Abdurakhmonov, Ibrokhim Y, Saha, Sukumar, Jenkins, Jonnie N, Buriev, Zabardast T, Shermatov, Shukhrat E, Scheffler, Brain E, Pepper, Alan E, Yu, John Z, Kohel, Russell J, Abdukarimov, Abdusattor

“…Cotton is the world's leading cash crop, but it lags behind other major crops for marker-assisted breeding due to limited polymorphisms and a genetic…”
Get full text

RNA Interference for Functional Genomics and Improvement of Cotton (Gossypium sp.) by Abdurakhmonov, Ibrokhim Y, Mirzakamol S. Ayubov, Khurshida A. Ubaydullaeva, Zabardast T. Buriev, Shukhrat E. Shermatov, Haydarali S. Ruziboev, Umid M. Shapulatov, Sukumar Saha, Mauricio Ulloa, John Z. Yu, Richard G. Percy, Eric J. Devor, Govind C. Sharma, Venkateswara R. Sripathi, Siva P. Kumpatla, Alexander van der Krol, Hake D. Kater, Khakimdjan Khamidov, Shavkat I. Salikhov, Johnie N. Jenkins, Abdusattor Abdukarimov, Alan E. Pepper

“…RNA interference (RNAi), is a powerful new technology in the discovery of genetic sequence functions, and has become a valuable tool for functional genomics of…”
Get full text

Arabidopsis thaliana carboxyl-terminal domain phosphatase-like 2 regulates plant growth, stress and auxin responses by Ueda, Akihiro, Li, Pinghua, Feng, Yue, Vikram, Meenu, Kim, Sewon, Kang, Chang Ho, Kang, Jae Sook, Bahk, Jeong Dong, Lee, Sang Yeol, Fukuhara, Toshiyuki, Staswick, Paul E, Pepper, Alan E, Koiwa, Hisashi

“…More than 20 genes in the Arabidopsis genome encode proteins similar to phosphatases that act on the carboxyl-terminal domain (CTD) of RNA polymerase II. One…”
Get full text

Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.) by Abdurakhmonov, Ibrokhim Y, Buriev, Zabardast T, Logan-Young, Carla Jo, Abdukarimov, Abdusattor, Pepper, Alan E

“…Phytochromes are a family of red/far-red photoreceptors that regulate a number of important developmental traits in cotton (Gossypium spp.), including plant…”
Get full text

Phytochrome RNAi enhances major fibre quality and agronomic traits of the cotton Gossypium hirsutum L by Abdurakhmonov, Ibrokhim Y., Buriev, Zabardast T., Saha, Sukumar, Jenkins, Johnie N., Abdukarimov, Abdusattor, Pepper, Alan E.

“…Simultaneous improvement of fibre quality, early-flowering, early-maturity and productivity in Upland cotton ( G. hirsutum ) is a challenging task for…”
Get full text

Exploring origins, invasion history and genetic diversity of Imperata cylindrica (L.) P. Beauv. (Cogongrass) in the United States using genotyping by sequencing by Burrell, A. Millie, Pepper, Alan E., Hodnett, George, Goolsby, John A., Overholt, William A., Racelis, Alexis E., Diaz, Rodrigo, Klein, Patricia E.

“…Imperata cylindrica (Cogongrass, Speargrass) is a diploid C4 grass that is a noxious weed in 73 countries and constitutes a significant threat to global…”
Get full text

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp by Hulse-Kemp, Amanda M, Lemm, Jana, Plieske, Joerg, Ashrafi, Hamid, Buyyarapu, Ramesh, Fang, David D, Frelichowski, James, Giband, Marc, Hague, Steve, Hinze, Lori L, Kochan, Kelli J, Riggs, Penny K, Scheffler, Jodi A, Udall, Joshua A, Ulloa, Mauricio, Wang, Shirley S, Zhu, Qian-Hao, Bag, Sumit K, Bhardwaj, Archana, Burke, John J, Byers, Robert L, Claverie, Michel, Gore, Michael A, Harker, David B, Islam, Md S, Jenkins, Johnie N, Jones, Don C, Lacape, Jean-Marc, Llewellyn, Danny J, Percy, Richard G, Pepper, Alan E, Poland, Jesse A, Mohan Rai, Krishan, Sawant, Samir V, Singh, Sunil Kumar, Spriggs, Andrew, Taylor, Jen M, Wang, Fei, Yourstone, Scott M, Zheng, Xiuting, Lawley, Cindy T, Ganal, Martin W, Van Deynze, Allen, Wilson, Iain W, Stelly, David M

“…High-throughput genotyping arrays provide a standardized resource for plant breeding communities that are useful for a breadth of applications including…”
Get full text

Novel nuclear markers inform the systematics and the evolution of serpentine use in Streptanthus and allies (Thelypodieae, Brassicaceae) by Ivalú Cacho, N., Millie Burrell, A., Pepper, Alan E., Strauss, Sharon Y.

“…[Display omitted] •Jewelflowers (Streptanthus complex) are florally and ecologically diverse mustards.•Many Jewelflowers are edaphic (soil) specialists, 1/3…”
Get full text

Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array by Hinze, Lori L, Hulse-Kemp, Amanda M, Wilson, Iain W, Zhu, Qian-Hao, Llewellyn, Danny J, Taylor, Jen M, Spriggs, Andrew, Fang, David D, Ulloa, Mauricio, Burke, John J, Giband, Marc, Lacape, Jean-Marc, Van Deynze, Allen, Udall, Joshua A, Scheffler, Jodi A, Hague, Steve, Wendel, Jonathan F, Pepper, Alan E, Frelichowski, James, Lawley, Cindy T, Jones, Don C, Percy, Richard G, Stelly, David M

“…Cotton germplasm resources contain beneficial alleles that can be exploited to develop germplasm adapted to emerging environmental and climate conditions…”
Get full text

Sporadic Genetic Connectivity among Small Insular Populations of the Rare Geoendemic Plant Caulanthus amplexicaulis var. barbarae (Santa Barbara Jewelflower) by Burrell, A Millie, Goddard, Jeffrey H R, Greer, Paul J, Williams, Ryan J, Pepper, Alan E

“…Abstract Globally, a small number of plants have adapted to terrestrial outcroppings of serpentine geology, which are characterized by soils with low levels of…”
Get full text

Evolution of Caulanthus amplexicaulis var. barbarae (Brassicaceae), a rare serpentine endemic plant: a molecular phylogenetic perspective by Pepper, Alan E., Norwood, Laura E.

“…Intra- and interspecific phylogenetic relationships of the rare serpentine endemic taxon Caulanthus amplexicaulus var. barbarae and related taxa in the…”
Get full text

Evolution of genome size in Brassicaceae by Johnston, J.S, Pepper, A.E, Hall, A.E, Chen, Z.J, Hodnett, G, Drabek, J, Lopez, R, Price, H.J

“…Background and Aims Brassicaceae, with nearly 340 genera and more than 3350 species, anchors the low range of angiosperm genome sizes. The relatively narrow…”
Get full text

Mapping genomic loci for cotton plant architecture, yield components, and fiber properties in an interspecific (Gossypium hirsutum L. × G. barbadense L.) RIL population by Yu, John Z, Ulloa, Mauricio, Hoffman, Steven M, Kohel, Russell J, Pepper, Alan E, Fang, David D, Percy, Richard G, Burke, John J

“…A quantitative trait locus (QTL) mapping was conducted to better understand the genetic control of plant architecture (PA), yield components (YC), and fiber…”
Get full text

Genetic analyses of nickel tolerance in a North American serpentine endemic plant, Caulanthus amplexicaulis var. barbarae (Brassicaceae) by Burrell, A. Millie, Hawkins, Angela K, Pepper, Alan E

“…• Premise of the study: The evolution of metal tolerance in plants is an important model for studies of adaptation to environment, population genetics, and…”
Get full text

A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome by Yu, John Z, Kohel, Russell J, Fang, David D, Cho, Jaemin, Van Deynze, Allen, Ulloa, Mauricio, Hoffman, Steven M, Pepper, Alan E, Stelly, David M, Jenkins, Johnie N, Saha, Sukumar, Kumpatla, Siva P, Shah, Manali R, Hugie, William V, Percy, Richard G

“…Genetic linkage maps play fundamental roles in understanding genome structure, explaining genome formation events during evolution, and discovering the genetic…”
Get full text

dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics by Neff, Michael M., Neff, Joseph D., Chory, Joanne, Pepper, Alan E.

“…Summary PCR‐based detection of single nucleotide polymorphisms is a powerful tool for the plant geneticist. Cleaved amplified polymorphic sequence analysis is…”
Get full text

Transcriptome Signatures of Selection, Drift, Introgression, and Gene Duplication in the Evolution of an Extremophile Endemic Plant by Hawkins, Angela K, Garza, Elyssa R, Dietz, Valerie A, Hernandez, Oscar J, Hawkins, W Daryl, Burrell, A Millie, Pepper, Alan E

“…Plants on serpentine soils provide extreme examples of adaptation to environment, and thus offer excellent models for the study of evolution at the molecular…”
Get full text

Development of 15 microsatellite loci in the endangered Streptanthus glandulosus subsp. niger (Brassicaceae) by Swope, Sarah M., Pepper, Alan E., Lee, Geneva T., Burnett, Brittany A., Horten, Hannah M.

“…Premise of the Study The endangered Streptanthus glandulosus subsp. niger (Brassicaceae) is endemic to a single peninsula in California and threatened by…”
Get full text