Search Results - "PECCOUD, J."

Genomics of adaptation to host-plants in herbivorous insects by Simon, Jean-Christophe, d'Alençon, Emmanuelle, Guy, Endrick, Jacquin-Joly, Emmanuelle, Jaquiéry, Julie, Nouhaud, Pierre, Peccoud, Jean, Sugio, Akiko, Streiff, Réjane

“…Herbivorous insects represent the most species-rich lineages of metazoans. The high rate of diversification in herbivorous insects is thought to result from…”
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Ten simple rules for managing laboratory information by Berezin, Casey-Tyler, Aguilera, Luis U, Billerbeck, Sonja, Bourne, Philip E, Densmore, Douglas, Freemont, Paul, Gorochowski, Thomas E, Hernandez, Sarah I, Hillson, Nathan J, King, Connor R, Köpke, Michael, Ma, Shuyi, Miller, Katie M, Moon, Tae Seok, Moore, Jason H, Munsky, Brian, Myers, Chris J, Nicholas, Dequina A, Peccoud, Samuel J, Zhou, Wen, Peccoud, Jean

“…Information is the cornerstone of research, from experimental (meta)data and computational processes to complex inventories of reagents and equipment. These 10…”
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Host range expansion of an introduced insect pest through multiple colonizations of specialized clones by PECCOUD, J, FIGUEROA, C.C, SILVA, A.X, RAMIREZ, C.C, MIEUZET, L, BONHOMME, J, STOECKEL, S, PLANTEGENEST, M, SIMON, J.-C

“…Asexuality confers demographic advantages to invasive taxa, but generally limits adaptive potential for colonizing of new habitats. Therefore, pre-existing…”
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Genomic regions repeatedly involved in divergence among plant‐specialized pea aphid biotypes by Nouhaud, P, Peccoud, J, Mahéo, F, Mieuzet, L, Jaquiéry, J, Simon, J.‐C

“…Understanding the genetic bases of biological diversification is a long‐standing goal in evolutionary biology. Here, we investigate whether replicated cases of…”
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Theoretical uncertainty of measurements using quantitative polymerase chain reaction by Peccoud, J., Jacob, C.

“…Current quantitative polymerase chain reaction (PCR) protocols are only indicative of the quantity of a target sequence relative to a standard, because no…”
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The Selective Values of Alleles in a Molecular Network Model Are Context Dependent by Peccoud, Jean, Velden, Kent Vander, Podlich, Dean, Winkler, Chris, Arthur, Lane, Cooper, Mark

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Sequencing Strategy to Ensure Accurate Plasmid Assembly by Hernandez, Sarah I., Berezin, Casey-Tyler, Miller, Katie M., Peccoud, Samuel J., Peccoud, Jean

“…Despite the wide use of plasmids in research and clinical production, the need to verify plasmid sequences is a bottleneck that is too often underestimated in…”
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A Continuum of Genetic Divergence from Sympatric Host Races to Species in the Pea Aphid Complex by Peccoud, Jean, Ollivier, Anthony, Plantegenest, Manuel, Simon, Jean-Christophe, Ayala, Francisco J.

“…Sympatric populations of insects adapted to different host plants, i.e., host races, are good models to investigate how natural selection can promote…”
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Estimation of the parameters of a branching process from migrating binomial observations by Jacob, C., Peccoud, J.

“…This paper considers a branching process generated by an offspring distribution F with mean m < ∞ and variance σ 2 < ∞ and such that, at each generation n ,…”
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Horizontally Transmitted Symbionts and Host Colonization of Ecological Niches by Henry, Lee M., Peccoud, Jean, Simon, Jean-Christophe, Hadfield, Jarrod D., Maiden, Martin J.C., Ferrari, Julia, Godfray, H. Charles J.

“…Facultative or “secondary” symbionts are common in eukaryotes, particularly insects. While not essential for host survival, they often provide significant…”
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Ten simple rules for managing laboratory information by Casey-Tyler Berezin, Luis U. Aguilera, Sonja Billerbeck, Philip E. Bourne, Douglas Densmore, Paul Freemont, Thomas E. Gorochowski, Sarah I. Hernandez, Nathan J. Hillson, Connor R. King, Michael Köpke, Shuyi Ma, Katie M. Miller, Tae Seok Moon, Jason H. Moore, Brian Munsky, Chris J. Myers, Dequina A. Nicholas, Samuel J. Peccoud, Wen Zhou, Jean Peccoud

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Gene synthesis demystified by Czar, Michael J, Anderson, J. Christopher, Bader, Joel S, Peccoud, Jean

“…DNA fabrication of genetic cassettes at base-level precision is transforming genetic engineering from a laborious art to an information-driven discipline…”
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Estimation of the parameters of a branching process from migrating binomial observations by Jacob, C., Peccoud, J.

“…This paper considers a branching process generated by an offspring distribution F with mean m < ∞ and variance σ2 < ∞ and such that, at each generation n,…”
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Modeling networks of molecular interactions in the living cell: structure, dynamics, and applications by Velden, K.V., Peccoud, J.

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Delineation of antigen contact residues on an MHC class II molecule by Peccoud, J., Dellabona, P., Allen, P., Benoist, C., Mathis, D.

“…This report describes a detailed mutational analysis of a major histocompatibility complex class II molecule–the alpha chain of the Ak complex. Each residue…”
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Evolutionary history of aphid-plant associations and their role in aphid diversification by Peccoud, Jean, Simon, Jean-Christophe, von Dohlen, Carol, Coeur d'acier, Armelle, Plantegenest, Manuel, Vanlerberghe-Masutti, Flavie, Jousselin, Emmanuelle

“…Aphids are intimately linked with their host plants that constitute their only food resource and habitat, and thus impose considerable selective pressure on…”
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I-Aα polymorphic residues that determine alloreactive T cell recognition by PIERRES, M, MARCHETTO, S, NAQUET, P, LANDAIS, D, PECCOUD, J, BENOIST, C, MATHIS, D

“…An individual's T lymphocytes are highly reactive to allogeneic MHC molecules. As a step in deciphering the mechanism of allorecognition by T lymphocytes, we…”
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Quantitative Modeling of Stochastic Systems in Molecular Biology by Using Stochastic Petri Nets by Peter J. E. Goss, Peccoud, Jean

“…An integrated understanding of molecular and developmental biology must consider the large number of molecular species involved and the low concentrations of…”
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Genetic design: rising above the sequence by Goler, Jonathan A, Bramlett, Brian W, Peccoud, Jean

“…Genetic engineering has developed around technologies enabling the targeted in vitro recombination of DNA molecules found in living organisms. As a result, the…”
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Multi-locus phylogenies of the genus Barteria (Passifloraceae) protray complex patterns in the evolution of myrmecophytism by Peccoud, J, Piatscheck, F, Yockteng, R, Garcia, M, Sauve, M, Djieto-Lordon, C, Harris, D.J, Wieringa, J.J, Breteler, F.J, Born, C, McKey, D, Blatrix, R

“…The four species of the central African genus Barteria show variation in habitat and in degree of association with ants. Whereas B. solida, restricted to…”
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