Search Results - "Ouellette, B"

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins by Krassowski, Michal, Paczkowska, Marta, Cullion, Kim, Huang, Tina, Dzneladze, Irakli, Ouellette, B F Francis, Yamada, Joseph T, Fradet-Turcotte, Amelie, Reimand, Jüri

“…Abstract Interpretation of genetic variation is needed for deciphering genotype-phenotype associations, mechanisms of inherited disease, and cancer driver…”
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Ten simple rules for writing a PLOS Computational Biology quick tips article by Palagi, Patricia M, Schwartz, Russell, Markel, Scott, Ouellette, B F Francis

“…With the increase of technical and scientific topics, in 2013, PLOS Computational Biology tried a new experience with a similar format—we introduced “Quick…”
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HiGlass: web-based visual exploration and analysis of genome interaction maps by Kerpedjiev, Peter, Abdennur, Nezar, Lekschas, Fritz, McCallum, Chuck, Dinkla, Kasper, Strobelt, Hendrik, Luber, Jacob M, Ouellette, Scott B, Azhir, Alaleh, Kumar, Nikhil, Hwang, Jeewon, Lee, Soohyun, Alver, Burak H, Pfister, Hanspeter, Mirny, Leonid A, Park, Peter J, Gehlenborg, Nils

“…We present HiGlass, an open source visualization tool built on web technologies that provides a rich interface for rapid, multiplex, and multiscale navigation…”
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Pathway and network analysis of cancer genomes by Creixell, Pau, Reimand, Jüri, Haider, Syed, Wu, Guanming, Shibata, Tatsuhiro, Vazquez, Miguel, Mustonen, Ville, Gonzalez-Perez, Abel, Pearson, John, Sander, Chris, Raphael, Benjamin J, Marks, Debora S, Ouellette, B F Francis, Valencia, Alfonso, Bader, Gary D, Boutros, Paul C, Stuart, Joshua M, Linding, Rune, Lopez-Bigas, Nuria, Stein, Lincoln D

“…International Cancer Genome Consortium members review and recommend approaches to pathway and network analysis to uncover molecular processes that contribute…”
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Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers by Brazas, Michelle D, Ouellette, B F Francis

“…Bioinformatics.ca has been hosting continuing education programs in introductory and advanced bioinformatics topics in Canada since 1999 and has trained more…”
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Computational approaches to identify functional genetic variants in cancer genomes by Gonzalez-Perez, Abel, Mustonen, Ville, Reva, Boris, Ritchie, Graham R S, Creixell, Pau, Karchin, Rachel, Vazquez, Miguel, Fink, J Lynn, Kassahn, Karin S, Pearson, John V, Bader, Gary D, Boutros, Paul C, Muthuswamy, Lakshmi, Ouellette, B F Francis, Reimand, Jüri, Linding, Rune, Shibata, Tatsuhiro, Valencia, Alfonso, Butler, Adam, Dronov, Serge, Flicek, Paul, Shannon, Nick B, Carter, Hannah, Ding, Li, Sander, Chris, Stuart, Josh M, Stein, Lincoln D, Lopez-Bigas, Nuria

“…International Cancer Genome Consortium members review and recommend computational approaches for identifying mutations that drive cancer progression from among…”
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Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs) by Cheung, Warren A, Ouellette, B F Francis, Wasserman, Wyeth W

“…MEDLINE®/PubMed® indexes over 20 million biomedical articles, providing curated annotation of its contents using a controlled vocabulary known as Medical…”
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GenBank by Benson, Dennis A., Boguski, Mark S., Lipman, David J., Ostell, James, Ouellette, B. F. Francis, Rapp, Barbara A., Wheeler, David L.

“…The GenBank (Registered Trademark symbol) sequence database incorporates DNA sequences from all available public sources, primarily through the direct…”
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BIND--The Biomolecular Interaction Network Database by Bader, G D, Donaldson, I, Wolting, C, Ouellette, B F, Pawson, T, Hogue, C W

“…The Biomolecular Interaction Network Database (BIND; http://binddb. org) is a database designed to store full descriptions of interactions, molecular complexes…”
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A quick guide for building a successful bioinformatics community by Budd, Aidan, Corpas, Manuel, Brazas, Michelle D, Fuller, Jonathan C, Goecks, Jeremy, Mulder, Nicola J, Michaut, Magali, Ouellette, B F Francis, Pawlik, Aleksandra, Blomberg, Niklas

“…"Scientific community" refers to a group of people collaborating together on scientific-research-related activities who also share common goals, interests, and…”
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Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts by D'Souza, C A, Kronstad, J W, Taylor, G, Warren, R, Yuen, M, Hu, G, Jung, W H, Sham, A, Kidd, S E, Tangen, K, Lee, N, Zeilmaker, T, Sawkins, J, McVicker, G, Shah, S, Gnerre, S, Griggs, A, Zeng, Q, Bartlett, K, Li, W, Wang, X, Heitman, J, Stajich, J E, Fraser, J A, Meyer, W, Carter, D, Schein, J, Krzywinski, M, Kwon-Chung, K J, Varma, A, Wang, J, Brunham, R, Fyfe, M, Ouellette, B F F, Siddiqui, A, Marra, M, Jones, S, Holt, R, Birren, B W, Galagan, J E, Cuomo, C A

“…Cryptococcus gattii recently emerged as the causative agent of cryptococcosis in healthy individuals in western North America, despite previous…”
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Analysis of five years of controlled access and data sharing compliance at the International Cancer Genome Consortium by Joly, Yann, de Vries-Seguin, Emilie, Chalmers, Don, Ouellette, B.F. Francis, Yamada, Joseph, Bobrow, Martin, Knoppers, Bartha M

“…To shed some light on this important debate, we have gathered data from 840 access requests processed over the last five years of operation at the…”
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CAERUS: predicting CAncER oUtcomeS using relationship between protein structural information, protein networks, gene expression data, and mutation data by Zhang, Kelvin Xi, Ouellette, B F Francis

“…Carcinogenesis is a complex process with multiple genetic and environmental factors contributing to the development of one or more tumors. Understanding the…”
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The International Cancer Genome Consortium's evolving data-protection policies by Milius, Djims, Dove, Edward S, Chalmers, Donald, Dyke, Stephanie O M, Kato, Kazuto, Nicolás, Pilar, Ouellette, BF Francis, Ozenberger, Brad, Rodriguez, Laura L, Zeps, Nikolajs, Joly, Yann

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The Biomolecular Interaction Network Database and related tools 2005 update by Alfarano, C., Andrade, C. E., Anthony, K., Bahroos, N., Bajec, M., Bantoft, K., Betel, D., Bobechko, B., Boutilier, K., Burgess, E., Buzadzija, K., Cavero, R., D'Abreo, C., Donaldson, I., Dorairajoo, D., Dumontier, M. J., Dumontier, M. R., Earles, V., Farrall, R., Feldman, H., Garderman, E., Gong, Y., Gonzaga, R., Grytsan, V., Gryz, E., Gu, V., Haldorsen, E., Halupa, A., Haw, R., Hrvojic, A., Hurrell, L., Isserlin, R., Jack, F., Juma, F., Khan, A., Kon, T., Konopinsky, S., Le, V., Lee, E., Ling, S., Magidin, M., Moniakis, J., Montojo, J., Moore, S., Muskat, B., Ng, I., Paraiso, J. P., Parker, B., Pintilie, G., Pirone, R., Salama, J. J., Sgro, S., Shan, T., Shu, Y., Siew, J., Skinner, D., Snyder, K., Stasiuk, R., Strumpf, D., Tuekam, B., Tao, S., Wang, Z., White, M., Willis, R., Wolting, C., Wong, S., Wrong, A., Xin, C., Yao, R., Yates, B., Zhang, S., Zheng, K., Pawson, T., Ouellette, B. F. F., Hogue, C. W. V.

“…The Biomolecular Interaction Network Database (BIND) (http://bind.ca) archives biomolecular interaction, reaction, complex and pathway information. Our aim is…”
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Disturbed glucose and pyruvate metabolism in glaucoma with neuroprotection by pyruvate or rapamycin by Harder, Jeffrey M., Guymer, Chelsea, Wood, John P. M., Daskalaki, Evangelia, Chidlow, Glyn, Zhang, Chi, Balasubramanian, Revathi, Cardozo, Brynn H., Foxworth, Nicole E., Deering, Kelly E., Ouellette, Tionna B., Montgomery, Christa, Wheelock, Craig E., Casson, Robert J., Williams, Pete A., John, Simon W. M.

“…Intraocular pressure-sensitive retinal ganglion cell degeneration is a hallmark of glaucoma, the leading cause of irreversible blindness. Here, we used…”
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Navigating the changing learning landscape: perspective from bioinformatics.ca by Brazas, Michelle D, Ouellette, B F Francis

“…With the advent of YouTube channels in bioinformatics, open platforms for problem solving in bioinformatics, active web forums in computing analyses and online…”
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A decade of Web Server updates at the Bioinformatics Links Directory: 2003-2012 by Brazas, Michelle D, Yim, David, Yeung, Winston, Ouellette, B F Francis

“…The 2012 Bioinformatics Links Directory update marks the 10th special Web Server issue from Nucleic Acids Research. Beginning with content from their 2003…”
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Education in computational biology today and tomorrow by Fox, Joanne A, Ouellette, B F Francis

“…  PLOS Computational Biology originally created the Education section to highlight the importance of education in the field [1]. [...]it was a great honor when…”
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A Cell-Based Assay for Measuring Endogenous BcrAbl Kinase Activity and Inhibitor Resistance by Ouellette, Steven B, Noel, Brett M, Parker, Laurie L

“…Kinase enzymes are an important class of drug targets, particularly in cancer. Cell-based kinase assays are needed to understand how potential kinase…”
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