Search Results - "Ortega, Josè Miguel"

Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies by Mugnai, Francesco, Costantini, Federica, Chenuil, Anne, Leduc, Michèle, Gutiérrez Ortega, José Miguel, Meglécz, Emese

“…In metabarcoding analyses, the taxonomic assignment is crucial to place sequencing data in biological and ecological contexts. This fundamental step depends on…”
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Dynamic changes in B cell subpopulations in response to triple-negative breast cancer development by Gonçalves, Igor Visconte, Pinheiro-Rosa, Natália, Torres, Lícia, Oliveira, Mariana de Almeida, Rapozo Guimarães, Gabriela, Leite, Christiana da Silva, Ortega, José Miguel, Lopes, Miriam Teresa Paz, Faria, Ana Maria Caetano, Martins, Mariana Lima Boroni, Felicori, Liza Figueiredo

“…Despite presenting a worse prognosis and being associated with highly aggressive tumors, triple-negative breast cancer (TNBC) is characterized by the higher…”
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Inositol 1, 4, 5-trisphosphate-dependent nuclear calcium signals regulate angiogenesis and cell motility in triple negative breast cancer by Guimarães, Erika, Machado, Rodrigo, Fonseca, Matheus de Castro, França, Andressa, Carvalho, Clarissa, Araújo E Silva, Ana Cândida, Almeida, Brígida, Cassini, Puebla, Hissa, Bárbara, Drumond, Luciana, Gonçalves, Carlos, Fernandes, Gabriel, De Brot, Marina, Moraes, Márcio, Barcelos, Lucíola, Ortega, José Miguel, Oliveira, André, Leite, M Fátima

“…Increases in nuclear calcium concentration generate specific biological outcomes that differ from those resulting from increased cytoplasmic calcium. Nuclear…”
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Identification of new sphingomyelinases D in pathogenic fungi and other pathogenic organisms by Dias-Lopes, Camila, Neshich, Izabella A P, Neshich, Goran, Ortega, José Miguel, Granier, Claude, Chávez-Olortegui, Carlos, Molina, Franck, Felicori, Liza

“…Sphingomyelinases D (SMases D) or dermonecrotic toxins are well characterized in Loxosceles spider venoms and have been described in some strains of pathogenic…”
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Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes by Lopes, Katia de Paiva, Campos-Laborie, Francisco José, Vialle, Ricardo Assunção, Ortega, José Miguel, De Las Rivas, Javier

“…The development of large-scale technologies for quantitative transcriptomics has enabled comprehensive analysis of the gene expression profiles in complete…”
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Molecular typing of Leptospira interrogans serovar Hardjo isolates from leptospirosis outbreaks in Brazilian livestock by Cosate, Maria Raquel V, Sakamoto, Tetsu, de Oliveira Mendes, Tiago Antônio, Moreira, Élvio C, Regis da Silva, Carlos G, Brasil, Bruno S A F, Oliveira, Camila S F, de Azevedo, Vasco Ariston, Ortega, José Miguel, Leite, Rômulo C, Haddad, João Paulo

“…Leptospirosis is caused by pathogenic spirochetes of the genus Leptospira spp. This zoonotic disease is distributed globally and affects domestic animals,…”
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Metazoan remaining genes for essential amino acid biosynthesis: sequence conservation and evolutionary analyses by Costa, Igor R, Thompson, Julie D, Ortega, José Miguel, Prosdocimi, Francisco

“…Essential amino acids (EAA) consist of a group of nine amino acids that animals are unable to synthesize via de novo pathways. Recently, it has been found that…”
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Analysis of the microarray gene expression for breast cancer progression after the application modified logistic regression by Morais-Rodrigues, Francielly, Silv́erio-Machado, Rita, Kato, Rodrigo Bentes, Rodrigues, Diego Lucas Neres, Valdez-Baez, Juan, Fonseca, Vagner, San, Emmanuel James, Gomes, Lucas Gabriel Rodrigues, dos Santos, Roselane Gonçalves, Vinicius Canário Viana, Marcus, da Cruz Ferraz Dutra, Joyce, Teixeira Dornelles Parise, Mariana, Parise, Doglas, Campos, Frederico F., de Souza, Sandro J., Ortega, José Miguel, Barh, Debmalya, Ghosh, Preetam, Azevedo, Vasco A.C., dos Santos, Marcos A.

“…Methods based around statistics and linear algebra have been increasingly used in attempts to address emerging questions in microarray literature. Microarray…”
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Geneapp: A web application for visualizing alternative splicing for biomedicine by Fernandes, Miquéias, Mario de Andrade, Edson, Reis da Silva, Saymon Gazolla, Romagnoli, Vinícius dos Santos, Ortega, José Miguel, Antônio de Oliveira Mendes, Tiago

“…Alternative Splicing (AS) is an essential mechanism for eukaryotes. However, the consequences of deleting a single exon can be dramatic for the organism and…”
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Brazilian Microbiome Project: Revealing the Unexplored Microbial Diversity—Challenges and Prospects by Pylro, Victor Satler, Roesch, Luiz Fernando Wurdig, Ortega, José Miguel, do Amaral, Alexandre Morais, Tótola, Marcos Rogério, Hirsch, Penny Ruth, Rosado, Alexandre Soares, Góes-Neto, Aristóteles, da Costa da Silva, Artur Luiz, Rosa, Carlos Augusto, Morais, Daniel Kumazawa, Andreote, Fernando Dini, Duarte, Gabriela Frois, de Melo, Itamar Soares, Seldin, Lucy, Lambais, Márcio Rodrigues, Hungria, Mariangela, Peixoto, Raquel Silva, Kruger, Ricardo Henrique, Tsai, Siu Mui, Azevedo, Vasco

“…The Brazilian Microbiome Project (BMP) aims to assemble a Brazilian Metagenomic Consortium/Database. At present, many metagenomic projects underway in Brazil…”
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Which came first, the transcriptional regulator or its target genes? An evolutionary perspective into the construction of eukaryotic regulons by Trefflich, Sheyla, Dalmolin, Rodrigo J.S., Ortega, José Miguel, Castro, Mauro A.A.

“…Eukaryotic regulons are regulatory units formed by a set of genes under the control of the same transcription factor (TF). Despite the functional plasticity,…”
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An open-source development based on photogrammetry for a real-time IORT treatment planning system by Lozares-Cordero, Sergio, Bermejo-Barbanoj, Carlos, Badías-Herbera, Alberto, Ibáñez-Carreras, Reyes, Ligorred-Padilla, Luis, Ponce-Ortega, José Miguel, González-Pérez, Víctor, Gandía-Martínez, Almudena, Font-Gómez, José Antonio, Blas-Borroy, Olga, González-Ibáñez, David

“…[Display omitted] •A TPS for low-energy photon IORT based on photogrammetry was developed.•The 3D images are reconstructed from a video obtained with a…”
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From In-Person to the Online World: Insights Into Organizing Events in Bioinformatics by da Silva, Alessandra Lima, Abreu, Ana Paula de, Mariano, Diego, Caixeta, Felipe, Santos, Fenícia Brito, Lage, Fernanda Stussi D., Quintanilha-Peixoto, Gabriel, Hilário, Heron. O., Xavier, Joicymara. S., Queiroz, Lucio. R., de Toledo, Nayara Evelin, Tavares, Raphael, Kato, Rodrigo Bentes, dos Santos, Roselane Gonçalves, Soares, Stellamaris, Goes, Wanessa. M., Nogueira, Wylerson. G., Batista, Thiago. M., Ortega, José Miguel, De Carvalho, Vasco Ariston Azevedo, Franco, Glória. Regina, Melo-Minardi, Raquel. C. de, Góes-Neto, Aristóteles

“…Bioinformatics is a fast-evolving research field, requiring effective educational initiatives to bring computational knowledge to Life Sciences. Since 2017, an…”
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Improvement in the prediction of the translation initiation site through balancing methods, inclusion of acquired knowledge and addition of features to sequences of mRNA by Silva, Lívia Márcia, Teixeira, Felipe Carvalho de Souza, Ortega, José Miguel, Zárate, Luis Enrique, Nobre, Cristiane Neri

“…The accurate prediction of the initiation of translation in sequences of mRNA is an important activity for genome annotation. However, obtaining an accurate…”
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Conducting potential range for poly( o-aminophenol) by Ortega, José Miguel

“…The polymer exhibits conducting properties at potentials more negative that the formal potential (defined as [ E p c+ E p a]/2) of the film. This conclusion is…”
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Survey of genome organization and gene content of Corynebacterium pseudotuberculosis by D’Afonseca, Vívian, Prosdocimi, Francisco, Dorella, Fernanda A., Pacheco, Luis Gustavo C., Moraes, Pablo M., Pena, Izabela, Ortega, Josè Miguel, Teixeira, Santuza, Oliveira, Sérgio Costa, Coser, Elisângela Monteiro, Oliveira, Luciana Márcia, Corrêa de Oliveira, Guilherme, Meyer, Roberto, Miyoshi, Anderson, Azevedo, Vasco

“…Corynebacterium pseudotuberculosis is an intracellular pathogen that causes Caseous lymphadenitis (CLA) disease in sheep and goats. The widespread occurrence…”
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Update of the gene discovery program in Schistosoma mansoni with the expressed sequence tag approach by Rabelo, E M, Franco, G R, Azevedo, V A, Pena, H B, Santos, T M, Meira, W S, Rodrigues, N A, Ortega, J M, Pena, S D

“…Continuing the Schistosoma mansoni Genome Project 363 new templates were sequenced generating 205 more ESTs corresponding to 91 genes. Seventy four of these…”
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A picture of gene sampling/expression in model organisms using ESTs and KOG proteins by Mudado, Maurício de Alvarenga, Ortega, José Miguel

“…The expressed sequence tag (EST) is an instrument of gene discovery. When available in large numbers, ESTs may be used to estimate gene expression. We analyzed…”
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1999: USE OF INTRAOPERATIVE RADIOTHERAPY AS RE-IRRADIATION IN SECOND BREAST-CONSERVING SURGERIES by Carnicer, Alberto Lanuza, Bonel, Arantxa Campos, Valero, Manuela Lanzuela, AyeteAndreu, Arantxa, Ortega, Jose Miguel Ponce, Pascual, María Cerrolaza, Sus, Alida Pardo, Aznar, Victoria Navarro, Chamarro, Javier Diez, Moreno, Raquel Castro, Crespo, Irene Carruesco, Mur, Maria Carmen García, Franco, Carmen Casamayor, cuesta, Patricia Rubio, Zarza, Beatriz Izaguirre, Carreras, Reyes Ibáñez

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Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains by Ruiz, Jerônimo C, D'Afonseca, Vívian, Silva, Artur, Ali, Amjad, Pinto, Anne C, Santos, Anderson R, Rocha, Aryanne A M C, Lopes, Débora O, Dorella, Fernanda A, Pacheco, Luis G C, Costa, Marcília P, Turk, Meritxell Z, Seyffert, Núbia, Moraes, Pablo M R O, Soares, Siomar C, Almeida, Sintia S, Castro, Thiago L P, Abreu, Vinicius A C, Trost, Eva, Baumbach, Jan, Tauch, Andreas, Schneider, Maria Paula C, McCulloch, John, Cerdeira, Louise T, Ramos, Rommel T J, Zerlotini, Adhemar, Dominitini, Anderson, Resende, Daniela M, Coser, Elisângela M, Oliveira, Luciana M, Pedrosa, André L, Vieira, Carlos U, Guimarães, Cláudia T, Bartholomeu, Daniela C, Oliveira, Diana M, Santos, Fabrício R, Rabelo, Élida Mara, Lobo, Francisco P, Franco, Glória R, Costa, Ana Flávia, Castro, Ieso M, Dias, Sílvia Regina Costa, Ferro, Jesus A, Ortega, José Miguel, Paiva, Luciano V, Goulart, Luiz R, Almeida, Juliana Franco, Ferro, Maria Inês T, Carneiro, Newton P, Falcão, Paula R K, Grynberg, Priscila, Teixeira, Santuza M R, Brommonschenkel, Sérgio, Oliveira, Sérgio C, Meyer, Roberto, Moore, Robert J, Miyoshi, Anderson, Oliveira, Guilherme C, Azevedo, Vasco

“…Corynebacterium pseudotuberculosis, a gram-positive, facultative intracellular pathogen, is the etiologic agent of the disease known as caseous lymphadenitis…”
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