Search Results - "Orlowski, Marek"
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LAP: Liability Antibody Profiler by sequence & structural mapping of natural and therapeutic antibodies
Published in PLoS computational biology (01-03-2024)“…Antibody-based therapeutics must not undergo chemical modifications that would impair their efficacy or hinder their developability. A commonly used technique…”
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Metal Ions Induce Liquid Condensate Formation by the F Domain of Aedes aegypti Ecdysteroid Receptor. New Perspectives of Nuclear Receptor Studies
Published in Cells (Basel, Switzerland) (05-03-2021)“…The superfamily of nuclear receptors (NRs), composed of ligand-activated transcription factors, is responsible for gene expression as a reaction to…”
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3
A Synergistic Formulation of Plant Extracts Decreases Postprandial Glucose and Insulin Peaks: Results from Two Randomized, Controlled, Cross-Over Studies Using Real-World Meals
Published in Nutrients (25-07-2018)“…This study investigated the efficacy of a plant-derived dietary supplement with respect to decreasing postprandial glucose and insulin peaks after the intake…”
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Benchmarking antibody clustering methods using sequence, structural, and machine learning similarity measures for antibody discovery applications
Published in Frontiers in molecular biosciences (28-03-2024)“…Antibodies are proteins produced by our immune system that have been harnessed as biotherapeutics. The discovery of antibody-based therapeutics relies on…”
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5
Sequences that direct subcellular traffic of the Drosophila methoprene-tolerant protein (MET) are located predominantly in the PAS domains
Published in Molecular and cellular endocrinology (15-10-2011)“…► We ask what elements affect subcellular traffic of methoprene-tolerant protein (MET). ► We identify mosaic of both nuclear localization signals and nuclear…”
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Multidomain sumoylation of the ecdysone receptor (EcR) from Drosophila melanogaster
Published in The Journal of steroid biochemistry and molecular biology (01-11-2013)“…•The three known EcR isoforms (A, B1 and B2) are targets of sumoylation.•Both predictions from bioinformatic tools and experimental data indicate that there is…”
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The variety of complexes formed by EcR and Usp nuclear receptors in the nuclei of living cells
Published in Molecular and cellular endocrinology (06-11-2008)“…The heterodimer of the ecdysone receptor (EcR) and ultraspiracle (Usp), members of the nuclear receptor superfamily, is considered to be functional receptor…”
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Nuclear immunophilin FKBP39 from Drosophila melanogaster drives spontaneous liquid-liquid phase separation
Published in International journal of biological macromolecules (15-11-2020)“…The FKBP39 from Drosophila melanogaster is a multifunctional regulatory immunophilin. It contains two globular domains linked by a highly charged disordered…”
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Plasticity of the Ecdysone Receptor DNA Binding Domain
Published in Molecular endocrinology (Baltimore, Md.) (01-09-2004)“…Ecdysteroids coordinate molting and metamorphosis in insects via a heterodimer of two nuclear receptors, the ecdysone receptor (EcR) and the ultraspiracle…”
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10
Homodimerization propensity of the intrinsically disordered N-terminal domain of Ultraspiracle from Aedes aegypti
Published in Biochimica et biophysica acta (01-06-2014)“…The mosquito Aedes aegypti is the principal vector of dengue, one of the most devastating arthropod-borne viral infections in humans. The isoform specific A/B…”
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Copper(II)-Binding Induces a Unique Polyproline Type II Helical Structure within the Ion-Binding Segment in the Intrinsically Disordered F‑Domain of Ecdysteroid Receptor from Aedes aegypti
Published in Inorganic chemistry (03-09-2019)“…Reproduction of the dominant vector of Zika and dengue diseases, Aedes aegypti mosquito, is controlled by an active heterodimer complex composed of the…”
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The intrinsically disordered C-terminal F domain of the ecdysteroid receptor from Aedes aegypti exhibits metal ion-binding ability
Published in The Journal of steroid biochemistry and molecular biology (01-02-2019)“…[Display omitted] •The F domain of EcR from A. aegypti (AaFEcR) belongs to a family of intrinsically disordered proteins (IDPs).•AaFEcR possesses putative…”
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Molecular determinants of Drosophila immunophilin FKBP39 nuclear localization
Published in Biological chemistry (25-04-2018)“…FK506-binding proteins (FKBPs) belong to a distinct class of immunophilins that interact with immunosuppressants. They use their peptidyl-prolyl isomerase…”
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Intrinsically disordered N-terminal domain of the Helicoverpa armigera Ultraspiracle stabilizes the dimeric form via a scorpion-like structure
Published in The Journal of steroid biochemistry and molecular biology (01-10-2018)“…•We investigated the influence of the disordered NTD on distant domains of HaUsp.•The NTD determines the pattern of the protein-DNA interaction of full-length…”
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Nucleoplasmin-like domain of FKBP39 from Drosophila melanogaster forms a tetramer with partly disordered tentacle-like C-terminal segments
Published in Scientific reports (11-01-2017)“…Nucleoplasmins are a nuclear chaperone family defined by the presence of a highly conserved N-terminal core domain. X-ray crystallographic studies of isolated…”
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The molecular basis of conformational instability of the ecdysone receptor DNA binding domain studied by in silico and in vitro experiments
Published in PloS one (23-01-2014)“…The heterodimer of the ecdysone receptor (EcR) and ultraspiracle (Usp), members of the nuclear receptors superfamily, regulates gene expression associated with…”
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The composite nature of the interaction between nuclear receptors EcR and DHR38
Published in Biological chemistry (01-05-2012)“…Ecdysteroids coordinate essential biological processes in Drosophila through a complex of two nuclear receptors, the ecdysteroid receptor (EcR) and the…”
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Novel DNA-binding element within the C-terminal extension of the nuclear receptor DNA-binding domain
Published in Nucleic acids research (01-04-2007)“…The heterodimer of the ecdysone receptor (EcR) and ultraspiracle (Usp), members of the nuclear receptors superfamily, is considered as the functional receptor…”
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EcR and Usp, components of the ecdysteroid nuclear receptor complex, exhibit differential distribution of molecular determinants directing subcellular trafficking
Published in Cellular signalling (01-03-2007)“…Ecdysteroids coordinate development, reproduction and other essential biological processes in insects and other arthropods through the receptor which is a…”
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Regulatory elements in the juvenile hormone binding protein gene from Galleria mellonella — Topography of binding sites for Usp and EcRDBD
Published in Biochimica et biophysica acta (01-06-2008)“…The juvenile hormone binding protein (JHBP) plays a key role in the protection and transport of the hormone to target tissues. In this report the sequence of…”
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