Search Results - "Omichinski, James"
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Metal-dependent Ser/Thr protein phosphatase PPM family: Evolution, structures, diseases and inhibitors
Published in Pharmacology & therapeutics (Oxford) (01-11-2020)“…Protein phosphatases and kinases control multiple cellular events including proliferation, differentiation, and stress responses through regulating reversible…”
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Peroxisome biogenesis initiated by protein phase separation
Published in Nature (London) (18-05-2023)“…Peroxisomes are organelles that carry out β-oxidation of fatty acids and amino acids. Both rare and prevalent diseases are caused by their dysfunction 1 …”
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Zinc controls PML nuclear body formation through regulation of a paralog specific auto-inhibition in SUMO1
Published in Nucleic acids research (12-08-2022)“…Abstract SUMO proteins are important regulators of many key cellular functions in part through their ability to form interactions with other proteins…”
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Pax7 pioneer factor action requires both paired and homeo DNA binding domains
Published in Nucleic acids research (21-07-2021)“…Abstract The pioneer transcription factor Pax7 contains two DNA binding domains (DBD), a paired and a homeo domain. Previous work on Pax7 and the related Pax3…”
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Structural and functional characterization of the role of acetylation on the interactions of the human Atg8-family proteins with the autophagy receptor TP53INP2/DOR
Published in Autophagy (01-09-2024)“…The Atg8-family proteins (MAP1LC3/LC3A, LC3B, LC3C, GABARAP, GABARAPL1 and GABARAPL2) play a pivotal role in macroautophagy/autophagy through their ability to…”
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Structural characterization of interactions between transactivation domain 1 of the p65 subunit of NF-κB and transcription regulatory factors
Published in Nucleic acids research (19-05-2017)“…p65 is a member of the NF-κB family of transcriptional regulatory proteins that functions as the activating component of the p65-p50 heterodimer. Through its…”
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The tetramerization domain of the tree shrew p53 protein displays unique thermostability despite sharing high sequence identity with the human p53 protein
Published in Biochemical and biophysical research communications (15-01-2020)“…The p53 protein plays a number of roles in protecting organisms from different genotoxic stresses and this includes DNA damage induced by acetaldehyde, a…”
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Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties
Published in International journal of molecular sciences (01-12-2023)“…The p53 protein is a transcriptional regulatory factor and many of its functions require that it forms a tetrameric structure. Although the tetramerization…”
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Role of active site arginine residues in substrate recognition by PPM1A
Published in Biochemical and biophysical research communications (03-12-2021)“…Reversible protein phosphorylation is a key mechanism for regulating numerous cellular events. The metal-dependent protein phosphatases (PPM) are a family of…”
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Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner
Published in Structure (London) (04-02-2020)“…The interactions between SUMO proteins and SUMO-interacting motif (SIM) in nuclear bodies formed by the promyelocytic leukemia (PML) protein (PML-NBs) have…”
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Structural and Functional Characterization of the Phosphorylation-Dependent Interaction between PML and SUMO1
Published in Structure (London) (06-01-2015)“…PML and several other proteins localizing in PML-nuclear bodies (PML-NB) contain phosphoSIMs (SUMO-interacting motifs), and phosphorylation of this motif plays…”
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Characterization of a C-Terminal SUMO-Interacting Motif Present in Select PIAS-Family Proteins
Published in Structure (London) (05-05-2020)“…The human PIAS proteins are small ubiquitin-like modifier (SUMO) E3 ligases that participate in important cellular functions. Several of these functions depend…”
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Structural and functional characterization of a complex between the acidic transactivation domain of EBNA2 and the Tfb1/p62 subunit of TFIIH
Published in PLoS pathogens (01-03-2014)“…Infection with the Epstein-Barr virus (EBV) can lead to a number of human diseases including Hodgkin's and Burkitt's lymphomas. The development of these…”
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MNDA controls the expression of MCL-1 and BCL-2 in chronic lymphocytic leukemia cells
Published in Experimental hematology (01-08-2020)“…•MNDA downregulates MCL-1 and BCL-2 in lymphoid cells.•MNDA is associated with (pre)mRNA.•MNDA is recruited to gene regulatory regions. The myeloid nuclear…”
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A hydride transfer complex reprograms NAD metabolism and bypasses senescence
Published in Molecular cell (16-09-2021)“…Metabolic rewiring and redox balance play pivotal roles in cancer. Cellular senescence is a barrier for tumorigenesis circumvented in cancer cells by poorly…”
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Unorthodox PCNA Binding by Chromatin Assembly Factor 1
Published in International journal of molecular sciences (21-09-2022)“…The eukaryotic DNA replication fork is a hub of enzymes that continuously act to synthesize DNA, propagate DNA methylation and other epigenetic marks, perform…”
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Monomer‐to‐dimer transition of Brucella suis type IV secretion system component VirB8 induces conformational changes
Published in The FEBS journal (01-04-2017)“…Secretion systems are protein complexes essential for bacterial virulence and potential targets for antivirulence drugs. In the intracellular pathogen…”
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The type IV secretion system core component VirB8 interacts via the β1‐strand with VirB10
Published in FEBS letters (01-08-2017)“…In this work, we provide evidence for the interactions between VirB8 and VirB10, two core components of the type IV secretion system (T4SS). Using nuclear…”
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ΩXaV motif in the Rift Valley fever virus NSs protein is essential for degrading p62, forming nuclear filaments and virulence
Published in Proceedings of the National Academy of Sciences - PNAS (12-05-2015)“…Significance Infection with the Rift Valley fever virus (RVFV) has the capacity to cause fatal hemorrhagic fever in humans. A unique characteristic of RVFV…”
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Molecular basis of interactions between SH3 domain-containing proteins and the proline-rich region of the ubiquitin ligase Itch
Published in The Journal of biological chemistry (14-04-2017)“…The ligase Itch plays major roles in signaling pathways by inducing ubiquitylation-dependent degradation of several substrates. Substrate recognition and…”
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