Search Results - "Okumuş, Burak"

Mitigation of host cell mutations and regime shift during microbial fermentation: a perspective from flux memory by Czajka, Jeffrey J, Okumuş, Burak, Koffas, Mattheos AG, Blenner, Mark, Tang, Yinjie J

“…Microbial engineering forces flux redistribution to accommodate higher production rates, straining the cellular supply chain and leading to growth deficiency…”
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A serious dermatological side effect due to vortioxetine: a case report by Okumus, Burak

“…Major depressive disorder is the second-largest healthcare problem worldwide in terms of illness-induced disability, and second-generation antidepressants are…”
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Understanding the effects of lysergic acid diethylamide and the importance of its prevention by Okumuş, Burak, Metin, Ahmet, Kariper, İ. Afşin

“…This review is on lysergic acid diethylamide (LSD), which has a halogenic effect and is addictive. Up to now, LSD has been used for pleasure-inducing or…”
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The Occurrence of Funeral Mania After Bereavement: A Case Report by Sonmez, Dogancan, Okumus, Burak, Hocaoglu, Cicek

“…Stressful or traumatic life events can lead to emergence of mood episodes. Events such as migration, relocation, job loss, bankruptcy, economic loss, divorce,…”
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Segregation of molecules at cell division reveals native protein localization by Landgraf, Dirk, Okumus, Burak, Chien, Peter, Baker, Tania A, Paulsson, Johan

“…The authors compare segregation of a protein into two daughter cells for the wild-type protein and a fluorescently tagged version, by assessing protein…”
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Stochastic activation of a DNA damage response causes cell-to-cell mutation rate variation by Uphoff, Stephan, Lord, Nathan D., Okumus, Burak, Potvin-Trottier, Laurent, Sherratt, David J., Paulsson, Johan

“…Cells rely on the precise action of proteins that detect and repair DNA damage. However, gene expression noise causes fluctuations in protein abundances that…”
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Fueling protein-DNA interactions inside porous nanocontainers by Cisse, Ibrahim, Okumus, Burak, Joo, Chirlmin, Ha, Taekjip

“…Vesicle encapsulation offers a biologically relevant environment for many soluble proteins and nucleic acids and an optimal immobilization medium for…”
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Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids by Iqbal, Asif, Arslan, Sinan, Okumus, Burak, Wilson, Timothy J, Giraud, Gerard, Norman, David G, Ha, Taekjip, Lilley, David M.J

“…We have found that the efficiency of fluorescence resonance energy transfer between Cy3 and Cy5 terminally attached to the 5' ends of a DNA duplex is…”
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Tracking bacterial lineages in complex and dynamic environments with applications for growth control and persistence by Bakshi, Somenath, Leoncini, Emanuele, Baker, Charles, Cañas-Duarte, Silvia J., Okumus, Burak, Paulsson, Johan

“…As bacteria transition from exponential to stationary phase, they change substantially in size, morphology, growth and expression profiles. These responses…”
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Quantification of very low-abundant proteins in bacteria using the HaloTag and epi-fluorescence microscopy by Lepore, Alessia, Taylor, Hannah, Landgraf, Dirk, Okumus, Burak, Jaramillo-Riveri, Sebastián, McLaren, Lorna, Bakshi, Somenath, Paulsson, Johan, Karoui, M. El

“…Cell biology is increasingly dependent on quantitative methods resulting in the need for microscopic labelling technologies that are highly sensitive and…”
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Multiple Intermediates in SNARE-Induced Membrane Fusion by Yoon, Tae-Young, Okumus, Burak, Zhang, Fan, Shin, Yeon-Kyun, Ha, Taekjip

“…Membrane fusion in eukaryotic cells is thought to be mediated by a highly conserved family of proteins called SNAREs (soluble N-ethyl maleimide…”
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Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells by Okumus, Burak, Landgraf, Dirk, Lai, Ghee Chuan, Bakshi, Somenath, Arias-Castro, Juan Carlos, Yildiz, Sadik, Huh, Dann, Fernandez-Lopez, Raul, Peterson, Celeste N., Toprak, Erdal, El Karoui, Meriem, Paulsson, Johan

“…Many key regulatory proteins in bacteria are present in too low numbers to be detected with conventional methods, which poses a particular challenge for…”
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Editorial: Next-generation quantitative and synthetic biology: High-sensitivity, high-accuracy, and digital approaches by Okumus, Burak, Pedraza, Juan M, Bakshi, Somenath

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Extreme Conformational Diversity in Human Telomeric DNA by Lee, J. Y., Burak Okumu, Kim, D. S., Ha, Taekjip

“…DNA with tandem repeats of guanines folds into G-quadruplexes made of a stack of G-quartets. In vitro, G-quadruplex formation inhibits telomere extension, and…”
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Single-Molecule Conformational Analysis of G-Quadruplex Formation in the Promoter DNA Duplex of the Proto-Oncogene C-Kit by Shirude, Pravin S, Okumus, Burak, Ying, Liming, Ha, Taekjip, Balasubramanian, Shankar

“…Herein we report on the single-molecule analysis of a conserved DNA quadruplex element found in the transcriptional activation site of the promoter of the…”
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Correction: Corrigendum: Mechanical slowing-down of cytoplasmic diffusion allows in vivo counting of proteins in individual cells by Okumus, Burak, Landgraf, Dirk, Lai, Ghee Chuan, Bakshi, Somenath, Arias-Castro, Juan Carlos, Yildiz, Sadik, Huh, Dann, Fernandez-Lopez, Raul, Peterson, Celeste N., Toprak, Erdal, El Karoui, Meriem, Paulsson, Johan

“…Nature Communications 7: Article number: 11641 (2016); Published: 18 May 2016; Updated: 24 June 2016. The original version of this Article contained an error…”
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Melankolik Depresyon tedavisinde venlafaksin ve agomelatinin birlikte kullanımı: Bir olgu sunumu by Okumuş,Burak, Hocaoğlu,Çiçek

“…Major Depresif Bozukluk (MDB); yaşam boyu yaygın olarak görülmektedir(1). Klinik depresyonun bu geniş heterojenliği, depresif alt tipleri tanımlamaya yönelik…”
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Isolating live cells after high-throughput, long-term, time-lapse microscopy by Luro, Scott, Potvin-Trottier, Laurent, Okumus, Burak, Paulsson, Johan

“…Single-cell genetic screens can be incredibly powerful, but current high-throughput platforms do not track dynamic processes, and even for non-dynamic…”
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Fluidic and microfluidic tools for quantitative systems biology by Okumus, Burak, Yildiz, Sadik, Toprak, Erdal

“…Graphical abstract…”
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Combination of venlafaxine and agomelatine in the treatment of melancholic depression: a case report by Okumuş, Burak, Hocaoǧlu, Çiçek, Beşenek, Ali Mert

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