Search Results - "Odom, Gabriel J."

Interpreting pathways to discover cancer driver genes with Moonlight by Colaprico, Antonio, Olsen, Catharina, Bailey, Matthew H., Odom, Gabriel J., Terkelsen, Thilde, Silva, Tiago C., Olsen, André V., Cantini, Laura, Zinovyev, Andrei, Barillot, Emmanuel, Noushmehr, Houtan, Bertoli, Gloria, Castiglioni, Isabella, Cava, Claudia, Bontempi, Gianluca, Chen, Xi Steven, Papaleo, Elena

“…Cancer driver gene alterations influence cancer development, occurring in oncogenes, tumor suppressors, and dual role genes. Discovering dual role cancer genes…”
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Capturing drug use patterns at a glance: An n-ary word sufficient statistic for repeated univariate categorical values by Odom, Gabriel J, Brandt, Laura, Castro, Clinton, Luo, Sean X, Feaster, Daniel J, Balise, Raymond R

“…Introduction The efficacy of treatments for substance use disorders (SUD) is tested in clinical trials in which participants typically provide urine samples to…”
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Editorial: Artificial intelligence for extracting phenotypic features and disease subtyping applied to single-cell sequencing data by Mallik, Saurav, Mukhopadhyay, Anirban, Li, Aimin, Odom, Gabriel J, Tomar, Namrata

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PathwayMultiomics: An R Package for Efficient Integrative Analysis of Multi-Omics Datasets With Matched or Un-matched Samples by Odom, Gabriel J, Colaprico, Antonio, Silva, Tiago C, Chen, X Steven, Wang, Lily

“…Recent advances in technology have made multi-omics datasets increasingly available to researchers. To leverage the wealth of information in multi-omics data,…”
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No evidence of accelerated epigenetic aging among black heroin users: A case vs control analysis by Jones, Jermaine D., Martinez, Suky, Gonzalez, Ingrid, Odom, Gabriel J., Comer, Sandra D.

“…This study sought to assess the association between illicit opioid use and accelerated epigenetic aging (A.K.A. DNAm Age) among people of African ancestry who…”
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An evaluation of supervised methods for identifying differentially methylated regions in Illumina methylation arrays by Mallik, Saurav, Odom, Gabriel J, Gao, Zhen, Gomez, Lissette, Chen, Xi, Wang, Lily

“…Abstract Epigenome-wide association studies (EWASs) have become increasingly popular for studying DNA methylation (DNAm) variations in complex diseases. The…”
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Evaluating the effect of acute diesel exhaust particle exposure on P-glycoprotein efflux transporter in the blood–brain barrier co-cultured with microglia by Aquino, Grace V., Dabi, Amjad, Odom, Gabriel J., Lavado, Ramon, Nunn, Kaitlin, Thomas, Kathryn, Schackmuth, Bennett, Shariff, Nazeel, Jarajapu, Manogna, Pluto, Morgan, Miller, Sara R., Eller, Leah, Pressley, Justin, Patel, Rishi R., Black, Jeffrey, Bruce, Erica D.

“…[Display omitted] •DEP may alter P-glycoprotein expression/function in vitro blood–brain barrier.•DEP significantly decreased blood–brain barrier tightness,…”
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The Effect of Changing the Military's Sexual Assault Laws on Law Enforcement Investigative Findings in the U.S. Army by Carpenter, Eric R., Gonzalez, Ingrid, Garcia, Stephanie, Odom, Gabriel J.

“…Objective: In 2007, Congress changed the military's sexual assault laws as part of an effort to improve sexual assault case processing. This study looked at…”
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Empirically contrasting urine drug screening‐based opioid use disorder treatment outcome definitions by Brandt, Laura, Odom, Gabriel J., Hu, Mei‐Chen, Castro, Clinton, Balise, Raymond R.

“…Background and aims A lack of consensus on the optimal outcome measures to assess opioid use disorder (OUD) treatment efficacy and their precise definition and…”
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coMethDMR: accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies with continuous phenotypes by Gomez, Lissette, Odom, Gabriel J, Young, Juan I, Martin, Eden R, Liu, Lizhong, Chen, Xi, Griswold, Anthony J, Gao, Zhen, Zhang, Lanyu, Wang, Lily

“…Recent technology has made it possible to measure DNA methylation profiles in a cost-effective and comprehensive genome-wide manner using array-based…”
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Evaluating the endothelial-microglial interaction and comprehensive inflammatory marker profiles under acute exposure to ultrafine diesel exhaust particles in vitro by Aquino, Grace V., Dabi, Amjad, Odom, Gabriel J., Zhang, Fan, Bruce, Erica D.

“…Exposure to combustion-derived particulate matter (PM) such as diesel exhaust particles (DEP) is a public health concern because people in urban areas are…”
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Risk of Experiencing an Overdose Event for Patients Undergoing Treatment With Medication for Opioid Use Disorder by Brandt, Laura, Hu, Mei-Chen, Liu, Ying, Castillo, Felipe, Odom, Gabriel J., Balise, Raymond R., Feaster, Daniel J., Nunes, Edward V., Luo, Sean X.

“…Objective:Overdose risk during a course of treatment with medication for opioid use disorder (MOUD) has not been clearly delineated. The authors sought to…”
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Individual-Level Risk Prediction of Return to Use During Opioid Use Disorder Treatment by Luo, Sean X, Feaster, Daniel J, Liu, Ying, Balise, Raymond R, Hu, Mei-Chen, Bouzoubaa, Layla, Odom, Gabriel J, Brandt, Laura, Pan, Yue, Hser, Yih-Ing, VanVeldhuisen, Paul, Castillo, Felipe, Calderon, Anna R, Rotrosen, John, Saxon, Andrew J, Weiss, Roger D, Wall, Melanie, Nunes, Edward V

“…No existing model allows clinicians to predict whether patients might return to opioid use in the early stages of treatment for opioid use disorder. To develop…”
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Lessons Learned From Miami-Dade County's COVID-19 Epidemic: Making Surveillance Data Accessible for Policy Makers by Williams, Roy, Bursac, Zoran, Trepka, Mary Jo, Odom, Gabriel J.

“…COVID-19 represents an unprecedented challenge to policy makers as well as those entrusted with capturing, monitoring, and analyzing COVID-19 data. Effective…”
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PathwayPCA: an R/Bioconductor Package for Pathway Based Integrative Analysis of Multi‐Omics Data by Odom, Gabriel J., Ban, Yuguang, Colaprico, Antonio, Liu, Lizhong, Silva, Tiago Chedraoui, Sun, Xiaodian, Pico, Alexander R., Zhang, Bing, Wang, Lily, Chen, Xi

“…The authors present pathwayPCA, an R/Bioconductor package for integrative pathway analysis that utilizes modern statistical methodology, including supervised…”
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Multistate multivariate statistical process control by Odom, Gabriel J., Newhart, Kathryn B., Cath, Tzahi Y., Hering, Amanda S.

“…For high‐dimensional, autocorrelated, nonlinear, and nonstationary data, adaptive‐dynamic principal component analysis (AD‐PCA) has been shown to do as well or…”
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Lessons Learned From Miami-Dade County's COVID-19 Epidemic: Making Surveillance Data Accessible for Policy Makers by Williams, Roy, Bursac, Zoran, Trepka, Mary Jo, Odom, Gabriel J.

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Three Applications of Linear Dimension Reduction by Odom, Gabriel J

“…Linear Dimension Reduction (LDR) has many uses in engineering, business, medicine, economics, data science and others. LDR can be employed when observations…”
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