Search Results - "OLIVEIRA, P. H."

qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps by Riley, Blake T., Wankowicz, Stephanie A., Oliveira, Saulo H. P., Zundert, Gydo C. P., Hogan, Daniel W., Fraser, James S., Keedy, Daniel A., Bedem, Henry

“…New X‐ray crystallography and cryo‐electron microscopy (cryo‐EM) approaches yield vast amounts of structural data from dynamic proteins and their complexes…”
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Scattering of compactlike structures by Bazeia, D., Mendonça, T. S., Menezes, R., de Oliveira, H. P.

“…We investigate the collision of a new class of topological defects that tends to become compact as a control parameter increases to larger and larger values…”
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Inflammatory profile of apical periodontitis associated with liver fibrosis in rats: histological and immunohistochemical analysis by Cantiga‐Silva, C., Estrela, C., Segura‐Egea, J. J., Azevedo, J. P., Oliveira, P. H. C., Cardoso, C. B. M., Pinheiro, T. N., Ervolino, E., Sivieri‐Araújo, G., Cintra, L. T. A.

“…Aim To investigate the effects of liver fibrosis (LF) on the pro‐inflammatory mediators and periapical bone resorption of apical periodontitis (AP) in rats…”
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A note about a new class of two-kinks by Mendonça, T. S., de Oliveira, H. P.

“…A bstract We present a model of two-kinks resulting from an explicit composition of two standards kinks of the ϕ 4 model based on the procedure of ref. [1]…”
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Building a better fragment library for de novo protein structure prediction by de Oliveira, Saulo H P, Shi, Jiye, Deane, Charlotte M

“…Fragment-based approaches are the current standard for de novo protein structure prediction. These approaches rely on accurate and reliable fragment libraries…”
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On the mechanical, electronic, and optical properties of the boron nitride analog for the recently synthesized biphenylene network: a DFT study by Monteiro, F. F., Giozza, W. F., Júnior, R. T. de Sousa, de Oliveira Neto, P. H., Júnior, L. A. Ribeiro, Júnior, M. L. Pereira

“…Context Recently, a new 2D carbon allotrope named biphenylene network (BPN) was experimentally realized. Here, we use density functional theory (DFT)…”
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Inflammatory biomarkers in infective endocarditis: machine learning to predict mortality by Ris, T., Teixeira‐Carvalho, A., Coelho, R. Matos Pinto, Brandao‐de‐Resende, C., Gomes, M. Souza, Amaral, L. Rodrigues, Pinto, P. H. Oliveira Murta, Santos, L. J. Souza, Salles, J. Teixeira, Roos‐Hesselink, Jolien, Verkaik, N., Ferrari, T. Cristina Abreu, Nunes, M. C. Pereira

“…Summary Infective endocarditis (IE) is the cardiac disease with the highest rates of mortality. New biomarkers that are able to identify patients at risk for…”
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RFQAmodel: Random Forest Quality Assessment to identify a predicted protein structure in the correct fold by West, Clare E, de Oliveira, Saulo H P, Deane, Charlotte M

“…While template-free protein structure prediction protocols now produce good quality models for many targets, modelling failure remains common. For these…”
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Critical behavior in black hole scalar field interaction by Crespo, J. A., de Oliveira, H. P.

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Preparation of KOH-doped PVA/PSSA Solid Polymer Electrolyte for DMFC: The Influence of TiO2 and PVP on Performance of Membranes by de Oliveira, A. H. P., Nascimento, M. L. F., de Oliveira, H. P.

“…The development of low cost alkaline anion solid exchange membranes requires high ionic conductivity, low liquid uptake, strong mechanical properties and…”
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Relationship between apical periodontitis and atherosclerosis in rats: lipid profile and histological study by Conti, L. C., Segura‐Egea, J. J., Cardoso, C. B. M., Benetti, F., Azuma, M. M., Oliveira, P. H. C., Bomfim, S. R. M., Cintra, L. T. A.

“…Aim To investigate the relationship between apical periodontitis and atherosclerosis in rats by lipid profile and carotid artery intima tunic measurement, and…”
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The Collision of Two-Kinks Revisited: the Creation of Kinks and Lump-Like Defects as Metastable States by Mendonça, T. S., de Oliveira, H. P.

“…We present a more detailed numerical investigation of the head-on collision of a two-kink/two-antikink system. We identified the escape of oscillon-like…”
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STCRDab: the structural T-cell receptor database by Leem, Jinwoo, de Oliveira, Saulo H P, Krawczyk, Konrad, Deane, Charlotte M

“…Abstract The Structural T-cell Receptor Database (STCRDab; http://opig.stats.ox.ac.uk/webapps/stcrdab) is an online resource that automatically collects and…”
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Contrasting Disease Progression, Microglia Reactivity, Tolerance, and Resistance to Toxoplasma gondii Infection in Two Mouse Strains by Diniz, Daniel G, de Oliveira, Jhonnathan H P, Guerreiro, Luma C F, de Menezes, Gabriel C, de Assis, Alexa C L, Duarte, Tainá Q, Dos Santos, Izabelly B D, Maciel, Flávia D, Soares, Gabrielly L da S, Araújo, Sanderson C, Franco, Felipe T de C, do Carmo, Ediclei L, Morais, Rafaela Dos A B, de Lima, Camila M, Brites, Dora, Anthony, Daniel C, Diniz, José A P, Diniz, Cristovam W P

“…Our study investigated the innate immune response to infection by assessing microglial phenotypic changes and sickness behavior as inflammatory response…”
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Respecification of structural equation models for the P cycle in tropical soils by Sales, M. V. S, Gama-Rodrigues, A. C, Comerford, N. B, Cropper, W. P, Gama-Rodrigues, E. F, Oliveira, P. H. G

“…Respecification of structural models allows evaluating new hypothesis and enhances understanding of how changes in one pool can affect the other pools in the…”
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Fish Oil Supplementation Improves Neutrophil Function During Cancer Chemotherapy by Bonatto, Sandro J. R., Oliveira, Heloisa H. P., Nunes, Everson A., Pequito, Daniele, Iagher, Fabiola, Coelho, Isabela, Naliwaiko, Katya, Kryczyk, Marcelo, Brito, Gleisson A. P., Repka, João, Sabóia, Luciano V., Fukujima, George, Calder, Philip C., Fernandes, Luiz C.

“…Cancer chemotherapy is associated with neutropenia and impaired neutrophil function. This study aimed to investigate whether supplementation with low dose fish…”
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Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis by Dasgupta, Medhanjali, Budday, Dominik, de Oliveira, Saulo H. P., Madzelan, Peter, Marchany-Rivera, Darya, Seravalli, Javier, Hayes, Brandon, Sierra, Raymond G., Boutet, Sébastien, Hunter, Mark S., Alonso-Mori, Roberto, Batyuk, Alexander, Wierman, Jennifer, Lyubimov, Artem, Brewster, Aaron S., Sauter, Nicholas K., Applegate, Gregory A., Tiwari, Virendra K., Berkowitz, David B., Thompson, Michael C., Cohen, Aina E., Fraser, James S., Wall, Michael E., van den Bedem, Henry, Wilson, Mark A.

“…How changes in enzyme structure and dynamics facilitate passage along the reaction coordinate is a fundamental unanswered question. Here, we use time-resolved…”
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qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X‑Ray Electron Density Maps by van Zundert, Gydo C. P, Hudson, Brandi M, de Oliveira, Saulo H. P, Keedy, Daniel A, Fonseca, Rasmus, Heliou, Amelie, Suresh, Pooja, Borrelli, Kenneth, Day, Tyler, Fraser, James S, van den Bedem, Henry

“…Proteins and ligands sample a conformational ensemble that governs molecular recognition, activity, and dissociation. In structure-based drug design, access to…”
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AT1 receptor antagonism promotes bone loss attenuation in experimental periodontitis, blocks inflammatory mediators, and upregulates antioxidant enzymes and bone formation markers by Dionísio, Thiago J., Souza, Gabriela P., Colombini‐Ishikiriama, Bella L., Garbieri, Thais F., Parisi, Viviane A., Oliveira, Gabriela M., Cano, Isadora P., Rodini, Camila O., Oliveira, Sandra H. P., Greene, Andrew S., Santos, Carlos F.

“…Background The initiation and progression of periodontitis might involve a local renin‐angiotensin system in periodontal tissue. This study hypothesized that…”
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Physico-chemical analysis of metronidazole encapsulation processes in Eudragit copolymers and their blending with amphiphilic block copolymers by de Oliveira, H.P., Tavares, G.F., Nogueiras, C., Rieumont, J.

“…A physico-chemical analysis of metronidazole–Eudragit copolymers L100 and RLPO (a cationic polymeric matrix with an electrophilic character) was carried out in…”
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