Search Results - "O’Neil, Shawn"

comparative study of ripening among berries of the grape cluster reveals an altered transcriptional programme and enhanced ripening rate in delayed berries by Gouthu, Satyanarayana, O’Neil, Shawn T, Di, Yanming, Ansarolia, Mitra, Megraw, Molly, Deluc, Laurent G

“…The developmental programme of grape berries within a cluster is coordinated to synchronize their ripening. Altered transcriptional events and metabolite…”
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Tofacitinib attenuates pathologic immune pathways in patients with psoriasis: A randomized phase 2 study by Krueger, James, MD, PhD, Clark, James D., PhD, Suárez-Fariñas, Mayte, PhD, Fuentes-Duculan, Judilyn, MD, Cueto, Inna, MSc, Wang, Claire Q., PhD, Tan, Huaming, PhD, Wolk, Robert, MD, Rottinghaus, Scott T., MD, Whitley, Maryann Z., DSc, Valdez, Hernan, MD, von Schack, David, PhD, O'Neil, Shawn P., DVM, PhD, Reddy, Padmalatha S., PhD, Tatulych, Svitlana, MD

“…Background Tofacitinib is an oral Janus kinase inhibitor being investigated for psoriasis. Objective We sought to elucidate the molecular mechanisms underlying…”
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Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon by O'Neil, Shawn T, Dzurisin, Jason D K, Carmichael, Rory D, Lobo, Neil F, Emrich, Scott J, Hellmann, Jessica J

“…Several recent studies have demonstrated the use of Roche 454 sequencing technology for de novo transcriptome analysis. Low error rates and high coverage also…”
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Sage-Grouse Population Dynamics are Adversely Affected by Overabundant Feral Horses by COATES, PETER S., O–NEIL, SHAWN T., MUÑOZ, DIANA A., DWIGHT, IAN A., TULL, JOHN C.

“…In recent decades, feral horse (Equus caballus; horse) populations increased in sagebrush (Artimesia spp.) ecosystems, especially within the Great Basin, to…”
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Territoriality drives preemptive habitat selection in recovering wolves: Implications for carnivore conservation by O'Neil, Shawn T., Vucetich, John A., Beyer, Dean E., Hoy, Sarah R., Bump, Joseph K., Vander Wal, Eric

“…According to the ideal‐free distribution (IFD), individuals within a population are free to select habitats that maximize their chances of success. Assuming…”
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Evolution of a TRIM5-CypA splice isoform in old world monkeys by Newman, Ruchi M, Hall, Laura, Kirmaier, Andrea, Pozzi, Lu-Ann, Pery, Erez, Farzan, Michael, O'Neil, Shawn P, Johnson, Welkin

“…The TRIM family proteins share a conserved arrangement of three adjacent domains, an N-terminal RING domain, followed by one or two B-boxes and a coiled-coil,…”
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Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient by Ryan, Sean F., Fontaine, Michael C., Scriber, J. Mark, Pfrender, Michael E., O'Neil, Shawn T., Hellmann, Jessica J.

“…Hybrid zones are a valuable tool for studying the process of speciation and for identifying the genomic regions undergoing divergence and the ecological…”
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Geographic principles applied to population dynamics: A spatially interpolated integrated population model by Prochazka, Brian G., Coates, Peter S., O'Neil, Shawn T., Espinosa, Shawn P., Aldridge, Cameron L.

“…A major impediment to wildlife conservation and management, from a quantitative perspective, is dealing with high degrees of uncertainty associated with…”
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Characterizing Intra-Tumor and Inter-Tumor Variability of Immune Cell Infiltrates in Murine Syngeneic Tumors by Mojtahedzadeh, Sepideh, Opsahl, Alan, Aguilar, Joan-Kristel, Li, Dingzhou, Streiner, Nicole, Wang, Jinwei, Trajkovic, Dusko, Boucher, Germaine, Coskran, Timothy, O'Neil, Shawn P., Ram, Sripad

“…Murine tumors are indispensable model systems in preclinical immuno-oncology research. While immunologic heterogeneity is well-known to be an important factor…”
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Nesting, brood rearing, and summer habitat selection by translocated greater sage‐grouse in North Dakota, USA by Lazenby, Kade D., Coates, Peter S., O’Neil, Shawn T., Kohl, Michel T., Dahlgren, David K.

“…Human enterprise has led to large‐scale changes in landscapes and altered wildlife population distribution and abundance, necessitating efficient and effective…”
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Broad-scale occurrence of a subsidized avian predator: Reducing impacts of ravens on sage-grouse and other sensitive prey by O'Neil, Shawn T., Coates, Peter S., Brussee, Brianne E., Jackson, Pat J., Howe, Kristy B., Moser, Ann M., Foster, Lee J., Delehanty, David J.

“…1. Expanding human enterprise across remote environments impacts numerous wildlife species. Anthropogenic resources provide subsidies for generalist predators…”
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Haplotype and minimum-chimerism consensus determination using short sequence data by O'Neil, Shawn T, Emrich, Scott J

“…Assembling haplotypes given sequence data derived from a single individual is a well studied problem, but only recently has haplotype assembly been considered…”
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A Bayesian multi‐stage modelling framework to evaluate impacts of energy development on wildlife populations: an application to greater sage‐grouse (Centrocercus urophasianus) by Prochazka, Brian G., O'Neil, Shawn T., Coates, Peter S.

“…Increased demand for domestic production of renewable energy has led to expansion of energy infrastructure across western North America. Much of the western…”
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Two Theobroma cacao genotypes with contrasting pathogen tolerance show aberrant transcriptional and ROS responses after salicylic acid treatment by Fister, Andrew S., O’Neil, Shawn T., Shi, Zi, Zhang, Yufan, Tyler, Brett M., Guiltinan, Mark J., Maximova, Siela N.

“…Understanding the genetic basis of pathogen susceptibility in various crop plants is crucial to increasing the stability of food, feed, and fuel production…”
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Territorial landscapes: incorporating density-dependence into wolf habitat selection studies by O'Neil, Shawn T, Beyer, Jr, Dean E, Bump, Joseph K

“…Habitat selection is a process that spans space, time and individual life histories. Ecological analyses of animal distributions and preferences are most…”
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Linking resource selection to population performance spatially to identify species' habitat across broad scales: An example of greater sage‐grouse in a distinct population segment by Milligan, Megan C., Coates, Peter S., Brussee, Brianne E., O'Neil, Shawn T., Mathews, Steven R., Espinosa, Shawn P., Miller, Katherine, Skalos, Daniel, Wiechman, Lief A., Abele, Steve, Boone, John, Boatner, Kristie, Stone, Heather, Casazza, Michael L.

“…Management decisions often focus on the habitat selection of marked individuals without considering the contribution to demographic performance in selected…”
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Nonpathogenic SIV Infection of Sooty Mangabeys Is Characterized by Limited Bystander Immunopathology Despite Chronic High-Level Viremia by Silvestri, Guido, Sodora, Donald L., Koup, Richard A., Paiardini, Mirko, O'Neil, Shawn P., McClure, Harold M., Staprans, Silvija I., Feinberg, Mark B.

“…HIV-infected humans and SIV-infected rhesus macaques who remain healthy despite long-term infection exhibit exceptionally low levels of virus replication and…”
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A spatially explicit modeling framework to guide management of subsidized avian predator densities by O'Neil, Shawn T., Coates, Peter S., Webster, Sarah C., Brussee, Brianne E., Dettenmaier, Seth J., Tull, John C., Jackson, Pat J., Casazza, Michael L., Espinosa, Shawn P.

“…Anthropogenic resource subsidization across western ecosystems has contributed to widespread increases in generalist avian predators, including common ravens…”
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Comparative nonclinical assessments of the biosimilar PF-06410293 and originator adalimumab by Derzi, Mazin, Shoieb, Ahmed M., Ripp, Sharon L., Finch, Gregory L., Lorello, Leslie G., O'Neil, Shawn P., Radi, Zaher, Syed, Jameel, Thompson, Matthew S., Leach, Michael W.

“…Adalimumab, a recombinant fully human monoclonal antibody targeting tumor necrosis factor (TNF), is approved in the United States and Europe to treat various…”
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Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI) by Toro, Sabrina, Anagnostopoulos, Anna V, Bello, Susan M, Blumberg, Kai, Cameron, Rhiannon, Carmody, Leigh, Diehl, Alexander D, Dooley, Damion M, Duncan, William D, Fey, Petra, Gaudet, Pascale, Harris, Nomi L, Joachimiak, Marcin P, Kiani, Leila, Lubiana, Tiago, Munoz-Torres, Monica C, O'Neil, Shawn, Osumi-Sutherland, David, Puig-Barbe, Aleix, Reese, Justin T, Reiser, Leonore, Robb, Sofia Mc, Ruemping, Troy, Seager, James, Sid, Eric, Stefancsik, Ray, Weber, Magalie, Wood, Valerie, Haendel, Melissa A, Mungall, Christopher J

“…Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus…”
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