Search Results - "O'Donnell, Lauren J"

Whole brain white matter connectivity analysis using machine learning: An application to autism by Zhang, Fan, Savadjiev, Peter, Cai, Weidong, Song, Yang, Rathi, Yogesh, Tunç, Birkan, Parker, Drew, Kapur, Tina, Schultz, Robert T., Makris, Nikos, Verma, Ragini, O'Donnell, Lauren J.

“…In this paper, we propose an automated white matter connectivity analysis method for machine learning classification and characterization of white matter…”
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White matter association tracts underlying language and theory of mind: An investigation of 809 brains from the Human Connectome Project by Zekelman, Leo R., Zhang, Fan, Makris, Nikos, He, Jianzhong, Chen, Yuqian, Xue, Tengfei, Liera, Daniela, Drane, Daniel L., Rathi, Yogesh, Golby, Alexandra J., O'Donnell, Lauren J.

“…•Association tracts are identified in 809 brains from the Human Connectome Project.•Tract microstructure influences semantic memory & emotion perception…”
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Q-space trajectory imaging for multidimensional diffusion MRI of the human brain by Westin, Carl-Fredrik, Knutsson, Hans, Pasternak, Ofer, Szczepankiewicz, Filip, Özarslan, Evren, van Westen, Danielle, Mattisson, Cecilia, Bogren, Mats, O'Donnell, Lauren J., Kubicki, Marek, Topgaard, Daniel, Nilsson, Markus

“…This work describes a new diffusion MR framework for imaging and modeling of microstructure that we call q-space trajectory imaging (QTI). The QTI framework…”
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Free water modeling of peritumoral edema using multi-fiber tractography: Application to tracking the arcuate fasciculus for neurosurgical planning by Gong, Shun, Zhang, Fan, Norton, Isaiah, Essayed, Walid I, Unadkat, Prashin, Rigolo, Laura, Pasternak, Ofer, Rathi, Yogesh, Hou, Lijun, Golby, Alexandra J, O'Donnell, Lauren J

“…Peritumoral edema impedes the full delineation of fiber tracts due to partial volume effects in image voxels that contain a mixture of cerebral parenchyma and…”
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SlicerDMRI: Open Source Diffusion MRI Software for Brain Cancer Research by Norton, Isaiah, Essayed, Walid Ibn, Zhang, Fan, Pujol, Sonia, Yarmarkovich, Alex, Golby, Alexandra J, Kindlmann, Gordon, Wassermann, Demian, Estepar, Raul San Jose, Rathi, Yogesh, Pieper, Steve, Kikinis, Ron, Johnson, Hans J, Westin, Carl-Fredrik, O'Donnell, Lauren J

“…Diffusion MRI (dMRI) is the only noninvasive method for mapping white matter connections in the brain. We describe SlicerDMRI, a software suite that enables…”
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Assessment of the Depiction of Superficial White Matter Using Ultra‐High‐Resolution Diffusion MRI by Zhang, Fan, Chen, Yuqian, Ning, Lipeng, Rushmore, Jarrett, Liu, Qiang, Du, Mubai, Hassanzadeh‐Behbahani, Shiva, Legarreta, Jon Haitz, Yeterian, Edward, Makris, Nikos, Rathi, Yogesh, O'Donnell, Lauren J.

“…ABSTRACT The superficial white matter (SWM) consists of numerous short‐range association fibers connecting adjacent and nearby gyri and plays an important role…”
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Comparison of multiple tractography methods for reconstruction of the retinogeniculate visual pathway using diffusion MRI by He, Jianzhong, Zhang, Fan, Xie, Guoqiang, Yao, Shun, Feng, Yuanjing, Bastos, Dhiego C. A., Rathi, Yogesh, Makris, Nikos, Kikinis, Ron, Golby, Alexandra J., O'Donnell, Lauren J.

“…The retinogeniculate visual pathway (RGVP) conveys visual information from the retina to the lateral geniculate nucleus. The RGVP has four subdivisions,…”
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White matter tractography for neurosurgical planning: A topography-based review of the current state of the art by Essayed, Walid I, Zhang, Fan, Unadkat, Prashin, Cosgrove, G Rees, Golby, Alexandra J, O'Donnell, Lauren J

“…We perform a review of the literature in the field of white matter tractography for neurosurgical planning, focusing on those works where tractography was…”
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Deep fiber clustering: Anatomically informed fiber clustering with self-supervised deep learning for fast and effective tractography parcellation by Chen, Yuqian, Zhang, Chaoyi, Xue, Tengfei, Song, Yang, Makris, Nikos, Rathi, Yogesh, Cai, Weidong, Zhang, Fan, O'Donnell, Lauren J.

“…•We propose a novel unsupervised deep learning framework, DFC, for fiber clustering.•DFC adopts self-supervised learning with a pretext task of fiber distance…”
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TractoSCR: a novel supervised contrastive regression framework for prediction of neurocognitive measures using multi-site harmonized diffusion MRI tractography by Xue, Tengfei, Zhang, Fan, Zekelman, Leo R, Zhang, Chaoyi, Chen, Yuqian, Cetin-Karayumak, Suheyla, Pieper, Steve, Wells, William M, Rathi, Yogesh, Makris, Nikos, Cai, Weidong, O'Donnell, Lauren J

“…Neuroimaging-based prediction of neurocognitive measures is valuable for studying how the brain's structure relates to cognitive function. However, the…”
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Anatomical assessment of trigeminal nerve tractography using diffusion MRI: A comparison of acquisition b-values and single- and multi-fiber tracking strategies by Xie, Guoqiang, Zhang, Fan, Leung, Laura, Mooney, Michael A., Epprecht, Lorenz, Norton, Isaiah, Rathi, Yogesh, Kikinis, Ron, Al-Mefty, Ossama, Makris, Nikos, Golby, Alexandra J., O'Donnell, Lauren J

“…•Investigation of the performance of multiple dMRI acquisitions and fiber models for trigeminal nerve (TGN) identification.•Expert rating study of over 1000…”
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Reconstruction of the arcuate fasciculus for surgical planning in the setting of peritumoral edema using two-tensor unscented Kalman filter tractography by Chen, Zhenrui, Tie, Yanmei, Olubiyi, Olutayo, Rigolo, Laura, Mehrtash, Alireza, Norton, Isaiah, Pasternak, Ofer, Rathi, Yogesh, Golby, Alexandra J, O'Donnell, Lauren J

“…Diffusion imaging tractography is increasingly used to trace critical fiber tracts in brain tumor patients to reduce the risk of post-operative neurological…”
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Directionally encoded color track density imaging in brain tumor patients: A potential application to neuro-oncology surgical planning by Sullivan, Jared J., Zekelman, Leo R., Zhang, Fan, Juvekar, Parikshit, Torio, Erickson F., Bunevicius, Adomas, Essayed, Walid I., Bastos, Dhiego, He, Jianzhong, Rigolo, Laura, Golby, Alexandra J., O'Donnell, Lauren J.

“…•White matter mapping in brain tumor patients using directionally encoded color (DEC)•Diffusion tensor vs. advanced DEC maps from post-tractography track…”
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Case Report: The Imperfect Association Between Craniofacial Lesion Burden and Pain in Fibrous Dysplasia by Golden, Emma, Zhang, Fan, Selen, Daryl J, Ebb, David, Romo, Laura, Drubach, Laura A, Shah, Nehal, O'Donnell, Lauren J, Lemme, Jordan D, Myers, Rachel, Cay, Mariesa, Kronenberg, Henry M, Westin, Carl-Fredrik, Boyce, Alison M, Kaban, Leonard B, Upadhyay, Jaymin

“…Patients with fibrous dysplasia (FD) often present with craniofacial lesions that affect the trigeminal nerve system. Debilitating pain, headache, and migraine…”
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Sex-Related Differences in White Matter Asymmetry and Its Implications for Verbal Working Memory in Psychosis High-Risk State by Steinmann, Saskia, Lyall, Amanda E., Langhein, Mina, Nägele, Felix L., Rauh, Jonas, Cetin-Karayumak, Suheyla, Zhang, Fan, Mussmann, Marius, Billah, Tashrif, Makris, Nikos, Pasternak, Ofer, O'Donnell, Lauren J., Rathi, Yogesh, Kubicki, Marek, Leicht, Gregor, Shenton, Martha E., Mulert, Christoph

“…Objective: Sexual dimorphism has been investigated in schizophrenia, although sex-specific differences among individuals who are at clinical high-risk (CHR)…”
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Quantitative mapping of the brain’s structural connectivity using diffusion MRI tractography: A review by Zhang, Fan, Daducci, Alessandro, He, Yong, Schiavi, Simona, Seguin, Caio, Smith, Robert E, Yeh, Chun-Hung, Zhao, Tengda, O’Donnell, Lauren J.

“…•A high-level overview of how tractography is used to enable quantitative analysis of the brains structural connectivity.•Review methodology involved for…”
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Exploring the impact of hippocampal sclerosis on white matter tracts and memory in individuals with mesial temporal lobe epilepsy by Zanao, Tamires A., Seitz‐Holland, Johanna, O'Donnell, Lauren J., Zhang, Fan, Rathi, Yogesh, Lopes, Tátila M., Pimentel‐Silva, Luciana Ramalho, Yassuda, Clarissa L., Makris, Nikos, Shenton, Martha E., Bouix, Sylvain, Lyall, Amanda E., Cendes, Fernando

“…Objective To investigate how the presence/side of hippocampal sclerosis (HS) are related to the white matter structure of cingulum bundle (CB), arcuate…”
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An anatomically curated fiber clustering white matter atlas for consistent white matter tract parcellation across the lifespan by Zhang, Fan, Wu, Ye, Norton, Isaiah, Rigolo, Laura, Rathi, Yogesh, Makris, Nikos, O'Donnell, Lauren J.

“…This work presents an anatomically curated white matter atlas to enable consistent white matter tract parcellation across different populations. Leveraging a…”
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Test–retest reproducibility of white matter parcellation using diffusion MRI tractography fiber clustering by Zhang, Fan, Wu, Ye, Norton, Isaiah, Rathi, Yogesh, Golby, Alexandra J., O'Donnell, Lauren J.

“…There are two popular approaches for automated white matter parcellation using diffusion MRI tractography, including fiber clustering strategies that group…”
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Deep learning based segmentation of brain tissue from diffusion MRI by Zhang, Fan, Breger, Anna, Cho, Kang Ik Kevin, Ning, Lipeng, Westin, Carl-Fredrik, O’Donnell, Lauren J., Pasternak, Ofer

“…•A novel deep learning method for WM, GM and CSF segmentation directly using dMRI data.•A novel augmented target loss function that penalizes segmentation…”
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